RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 CLASRPQ8N2M8 674 aaKnown RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 INTS4Q96HW7 963 aaKnown RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 CHMP4AQ9BY43 222 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 BICC1Q9H694 974 aaKnown RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 GDPD2Q9HCC8 539 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 GLRX3O76003 335 aaKnown RBP12.15□□□□□ -0.46
LRRC28-216ENST00000559819 PTH1RQ03431 593 aa12.15□□□□□ -0.46
LRRC28-216ENST00000559819 AACSQ86V21 672 aa12.15□□□□□ -0.46
LRRC28-216ENST00000559819 TTC41PQ6P2S7 1318 aa12.15□□□□□ -0.46
LRRC28-216ENST00000559819 PIP4K2AP48426 406 aaPredicted RBP12.15□□□□□ -0.47
LRRC28-216ENST00000559819 AK2P54819 239 aa12.15□□□□□ -0.47
LRRC28-216ENST00000559819 DDX54Q8TDD1 881 aaKnown RBP12.15□□□□□ -0.47
LRRC28-216ENST00000559819 DIAPH3Q9NSV4 1193 aa12.15□□□□□ -0.47
LRRC28-216ENST00000559819 HYPKQ9NX55 129 aa12.15□□□□□ -0.47
LRRC28-216ENST00000559819 ERBB3P21860 1342 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 TRPM3Q9HCF6 1732 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 SYCE3A1L190 88 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 GRM8O00222 908 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 IFIT2P09913 472 aaKnown RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 KIAA1211Q6ZU35 1233 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 KLHDC4Q8TBB5 520 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 TTC14Q96N46 770 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 CCDC8Q9H0W5 538 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 SIL1Q9H173 461 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 ECHDC1Q9NTX5 307 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 NLRP2Q9NX02 1062 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 RGPD5Q99666 1765 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 C1orf167Q5SNV9 1468 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 SASH1O94885 1247 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 IGKV5-2P06315 115 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 CCDC173Q0VFZ6 552 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 JARID2Q92833 1246 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 DDX21Q9NR30 783 aaKnown RBP eCLIP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 TLR7Q9NYK1 1049 aaKnown RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 OVOS2A0A0G2JMS6 1433 aa12.14□□□□□ -0.47
LRRC28-216ENST00000559819 RPAP1Q9BWH6 1393 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-216ENST00000559819 GADD45BO75293 160 aaPredicted RBP12.13□□□□□ -0.47
LRRC28-216ENST00000559819 RUFY3Q7L099 469 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 LINS1Q8NG48 757 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 PPP1R9BQ96SB3 815 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 CAMTA1Q9Y6Y1 1673 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 KDM6AO15550 1401 aaPredicted RBP12.13□□□□□ -0.47
LRRC28-216ENST00000559819 LARGE1O95461 756 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 TPRNQ4KMQ1 711 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 ZNF790Q6PG37 636 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 RIC3Q7Z5B4 369 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 NFATC2IPQ8NCF5 419 aa12.13□□□□□ -0.47
LRRC28-216ENST00000559819 EAF2Q96CJ1 260 aaPredicted RBP12.13□□□□□ -0.47
LRRC28-216ENST00000559819 CRYBG1Q9Y4K1 1723 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 EPB41L2O43491 1005 aaKnown RBP12.12□□□□□ -0.47
LRRC28-216ENST00000559819 CASTP20810 708 aaKnown RBP12.12□□□□□ -0.47
LRRC28-216ENST00000559819 ADCK5Q3MIX3 580 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 PRPF40BQ6NWY9 871 aaKnown RBP12.12□□□□□ -0.47
LRRC28-216ENST00000559819 CABLES1Q8TDN4 633 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 RAPGEF4Q8WZA2 1011 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 SIPA1L3O60292 1781 aaPredicted RBP12.12□□□□□ -0.47
LRRC28-216ENST00000559819 EPHA10Q5JZY3 1008 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 XAGE3Q8WTP9 111 aa12.12□□□□□ -0.47
LRRC28-216ENST00000559819 DDX58O95786 925 aaKnown RBP12.11□□□□□ -0.47
LRRC28-216ENST00000559819 G3BP1Q13283 466 aaKnown RBP eCLIP12.11□□□□□ -0.47
LRRC28-216ENST00000559819 ERC1Q8IUD2 1116 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 FAM227BQ96M60 508 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 NAP1L5Q96NT1 182 aaPredicted RBP12.11□□□□□ -0.47
LRRC28-216ENST00000559819 MYD88Q99836 296 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 SLC52A2Q9HAB3 445 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 ADAMTSL3P82987 1691 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 NPHP3Q7Z494 1330 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 PHKG2P15735 406 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 CHRNA2Q15822 529 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 LRSAM1Q6UWE0 723 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 GPATCH3Q96I76 525 aa12.11□□□□□ -0.47
LRRC28-216ENST00000559819 COL9A3Q14050 684 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 COPS6Q7L5N1 327 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 ANP32BQ92688 251 aaKnown RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 ZNF496Q96IT1 587 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 JAKMIP1Q96N16 626 aaKnown RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 BOLA2Q9H3K6 86 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 MEGF6O75095 1541 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 UTYO14607 1347 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 WDR33Q9C0J8 1336 aaKnown RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 C5P01031 1676 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 NEURL1BA8MQ27 555 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 CSB-PGBD3P0DP91 1061 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 TATP17735 454 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 NMIQ13287 307 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-216ENST00000559819 USP48Q86UV5 1035 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 LIMCH1Q9UPQ0 1083 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 MBD3O95983 291 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 CCDC83Q8IWF9 413 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 RNF214Q8ND24 703 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 RUFY2Q8WXA3 655 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 EVI5LQ96CN4 794 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 C19orf44Q9H6X5 657 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 USP16Q9Y5T5 823 aa12.1□□□□□ -0.47
LRRC28-216ENST00000559819 CNPY2Q9Y2B0 182 aa12.09□□□□□ -0.47
LRRC28-216ENST00000559819 ADAMTS7Q9UKP4 1686 aa12.09□□□□□ -0.47
LRRC28-216ENST00000559819 LARP1Q6PKG0 1096 aaKnown RBP12.09□□□□□ -0.47
LRRC28-216ENST00000559819 PDRG1Q9NUG6 133 aa12.09□□□□□ -0.47
LRRC28-216ENST00000559819 CCDC171Q6TFL3 1326 aa12.08□□□□□ -0.47
LRRC28-216ENST00000559819 GCKRQ14397 625 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms