RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ZNF652Q9Y2D9 606 aa14.69□□□□□ -0.06
CCDC88C-213ENST00000557455 KDM3BQ7LBC6 1761 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 ARFGEF2Q9Y6D5 1785 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 NFKBIEO00221 500 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 MIS18AQ9NYP9 233 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 WDR90Q96KV7 1748 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 SLX4Q8IY92 1834 aa14.68□□□□□ -0.06
CCDC88C-213ENST00000557455 NBPF26B4DH59 902 aa14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 C21orf2O43822 256 aa14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 FSTL1Q12841 308 aa14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 NBPF10Q6P3W6 841 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 NBPF5PQ86XG9 351 aaPredicted RBP14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 NBPF15Q8N660 670 aa14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 PNISRQ8TF01 805 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 PNNQ9H307 717 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-213ENST00000557455 GLTPD2A6NH11 291 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 STYK1Q6J9G0 422 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 CNKSR1Q969H4 720 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 MASTLQ96GX5 879 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 PLEKHF1Q96S99 279 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 MAPK8IP3Q9UPT6 1336 aa14.66□□□□□ -0.06
CCDC88C-213ENST00000557455 NUP98P52948 1817 aa14.65□□□□□ -0.06
CCDC88C-213ENST00000557455 RGL2O15211 777 aa14.65□□□□□ -0.06
CCDC88C-213ENST00000557455 SRGNP10124 158 aa14.65□□□□□ -0.06
CCDC88C-213ENST00000557455 NFE2L2Q16236 605 aa14.65□□□□□ -0.06
CCDC88C-213ENST00000557455 NIP7Q9Y221 180 aaKnown RBP eCLIP14.65□□□□□ -0.06
CCDC88C-213ENST00000557455 VEGFAP15692 232 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-213ENST00000557455 DPY19L2Q6NUT2 758 aa14.64□□□□□ -0.07
CCDC88C-213ENST00000557455 PRPF40BQ6NWY9 871 aaKnown RBP14.64□□□□□ -0.07
CCDC88C-213ENST00000557455 TPTE2Q6XPS3 522 aa14.64□□□□□ -0.07
CCDC88C-213ENST00000557455 ERFEQ4G0M1 354 aa14.63□□□□□ -0.07
CCDC88C-213ENST00000557455 SOGA3Q5TF21 947 aa14.63□□□□□ -0.07
CCDC88C-213ENST00000557455 SMC1BQ8NDV3 1235 aa14.63□□□□□ -0.07
CCDC88C-213ENST00000557455 TAOK3Q9H2K8 898 aa14.63□□□□□ -0.07
CCDC88C-213ENST00000557455 FAM177BA6PVY3 158 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 NPR1P16066 1061 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 EIF4A1P60842 406 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 HLFQ16534 295 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 NGEFQ8N5V2 710 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 DNAJC5GQ8N7S2 189 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 THUMPD2Q9BTF0 503 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 LTBP3Q9NS15 1303 aa14.62□□□□□ -0.07
CCDC88C-213ENST00000557455 GTF2E1P29083 439 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-213ENST00000557455 RALBP1Q15311 655 aa14.61□□□□□ -0.07
CCDC88C-213ENST00000557455 RRP7AQ9Y3A4 280 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-213ENST00000557455 KLRG2A4D1S0 409 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-213ENST00000557455 HTRA3P83110 453 aa14.6□□□□□ -0.07
CCDC88C-213ENST00000557455 ERVV-1B6SEH8 477 aa14.59□□□□□ -0.07
CCDC88C-213ENST00000557455 MYL6BP14649 208 aa14.59□□□□□ -0.07
CCDC88C-213ENST00000557455 CCDC93Q567U6 631 aa14.59□□□□□ -0.07
CCDC88C-213ENST00000557455 KIF6Q6ZMV9 814 aa14.59□□□□□ -0.07
CCDC88C-213ENST00000557455 NYXQ9GZU5 481 aa14.59□□□□□ -0.07
CCDC88C-213ENST00000557455 POTECB2RU33 542 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 RIPK4P57078 832 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 IFFO2Q5TF58 517 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 C7orf43Q8WVR3 580 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 TSPYL4Q9UJ04 414 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 MAP3K15Q6ZN16 1313 aa14.58□□□□□ -0.08
CCDC88C-213ENST00000557455 ALDH1B1P30837 517 aa14.57□□□□□ -0.08
CCDC88C-213ENST00000557455 TTLL7Q6ZT98 887 aa14.57□□□□□ -0.08
CCDC88C-213ENST00000557455 KLRG1Q96E93 195 aa14.57□□□□□ -0.08
CCDC88C-213ENST00000557455 DDX10Q13206 875 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-213ENST00000557455 NUTM1Q86Y26 1132 aa14.56□□□□□ -0.08
CCDC88C-213ENST00000557455 ZBTB3Q9H5J0 574 aa14.56□□□□□ -0.08
CCDC88C-213ENST00000557455 ERBB4Q15303 1308 aa14.56□□□□□ -0.08
CCDC88C-213ENST00000557455 SCN4AP35499 1836 aa14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 DDNO94850 711 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 GPTP24298 496 aa14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 TMPOP42166 694 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 FKBP4Q02790 459 aaKnown RBP eCLIP14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 LMOD3Q0VAK6 560 aa14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 RTKN2Q8IZC4 609 aa14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 MYBBP1AQ9BQG0 1328 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-213ENST00000557455 EIF2S2P20042 333 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-213ENST00000557455 OLFM4Q6UX06 510 aa14.54□□□□□ -0.08
CCDC88C-213ENST00000557455 BABAM1Q9NWV8 329 aa14.54□□□□□ -0.08
CCDC88C-213ENST00000557455 ABCC12Q96J65 1359 aa14.54□□□□□ -0.08
CCDC88C-213ENST00000557455 IBTKQ9P2D0 1353 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 UBN2Q6ZU65 1347 aa14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 CRY2Q49AN0 593 aa14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 SUSD4Q5VX71 490 aa14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 GIGYF2Q6Y7W6 1299 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 JMYQ8N9B5 988 aa14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 RPGRQ92834 1020 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 ZNF277Q9NRM2 450 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-213ENST00000557455 RIC1Q4ADV7 1423 aa14.52□□□□□ -0.08
CCDC88C-213ENST00000557455 IQCA1LA6NCM1 817 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 NEUROD2Q15784 382 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 PPP1R42Q7Z4L9 355 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 CCDC146Q8IYE0 955 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 ZNF34Q8IZ26 560 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 ANKRD36CQ5JPF3 1778 aa14.52□□□□□ -0.09
CCDC88C-213ENST00000557455 PCNTO95613 3336 aa14.51□□□□□ -0.09
CCDC88C-213ENST00000557455 PDIA6Q15084 440 aa14.51□□□□□ -0.09
CCDC88C-213ENST00000557455 CHADLQ6NUI6 762 aa14.51□□□□□ -0.09
CCDC88C-213ENST00000557455 SYNE4Q8N205 404 aa14.51□□□□□ -0.09
CCDC88C-213ENST00000557455 RBM17Q96I25 401 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-213ENST00000557455 NTSR2O95665 410 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 ANXA1P04083 346 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 HOXA10P31260 410 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms