RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 PDE6BP35913 854 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 AKAP4Q5JQC9 854 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 PIP4P2Q8N4L2 257 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 BRIP1Q9BX63 1249 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 TAF1DQ9H5J8 278 aaPredicted RBP12.73□□□□□ -0.37
SYNE2-224ENST00000557024 ITGBL1O95965 494 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-224ENST00000557024 EAPPQ56P03 285 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-224ENST00000557024 PRR5LQ6MZQ0 368 aa12.72□□□□□ -0.37
SYNE2-224ENST00000557024 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
SYNE2-224ENST00000557024 CLSPNQ9HAW4 1339 aa12.71□□□□□ -0.37
SYNE2-224ENST00000557024 RNMTO43148 476 aaKnown RBP12.71□□□□□ -0.37
SYNE2-224ENST00000557024 PRPF40BQ6NWY9 871 aaKnown RBP12.71□□□□□ -0.37
SYNE2-224ENST00000557024 L3MBTL3Q96JM7 780 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-224ENST00000557024 CLEC11AQ9Y240 323 aa12.71□□□□□ -0.37
SYNE2-224ENST00000557024 NPHP1O15259 732 aa12.7□□□□□ -0.38
SYNE2-224ENST00000557024 EIF5P55010 431 aaKnown RBP12.7□□□□□ -0.38
SYNE2-224ENST00000557024 ZNF330Q9Y3S2 320 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-224ENST00000557024 MRC1P22897 1456 aa12.7□□□□□ -0.38
SYNE2-224ENST00000557024 ZNF541Q9H0D2 1346 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 A0A087WZG4 1122 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 RASSF10A6NK89 507 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 STARD3NLO95772 234 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 IL13P35225 146 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 STYK1Q6J9G0 422 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 CNBD1Q8NA66 436 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 CNKSR1Q969H4 720 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 TBC1D2BQ9UPU7 963 aa12.69□□□□□ -0.38
SYNE2-224ENST00000557024 COL11A2P13942 1736 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-224ENST00000557024 WDR33Q9C0J8 1336 aaKnown RBP12.68□□□□□ -0.38
SYNE2-224ENST00000557024 CCDC88AQ3V6T2 1871 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 CCDC85CA6NKD9 419 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 SRGNP10124 158 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 MLLT1Q03111 559 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-224ENST00000557024 DEFB115Q30KQ5 88 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 SOGA3Q5TF21 947 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 MAP1SQ66K74 1059 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-224ENST00000557024 MORC1Q86VD1 984 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 PANK3Q9H999 370 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 HACL1Q9UJ83 578 aa12.68□□□□□ -0.38
SYNE2-224ENST00000557024 SCN11AQ9UI33 1791 aa12.67□□□□□ -0.38
SYNE2-224ENST00000557024 EPHX2P34913 555 aa12.67□□□□□ -0.38
SYNE2-224ENST00000557024 MAP2K1Q02750 393 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-224ENST00000557024 CNTROBQ8N137 903 aa12.67□□□□□ -0.38
SYNE2-224ENST00000557024 ABT1Q9ULW3 272 aaKnown RBP12.67□□□□□ -0.38
SYNE2-224ENST00000557024 ANKRD31Q8N7Z5 1873 aa12.67□□□□□ -0.38
SYNE2-224ENST00000557024 FER1L6Q2WGJ9 1857 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 HMOX1P09601 288 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 FXR2P51116 673 aaKnown RBP eCLIP12.66□□□□□ -0.386e-15■■■■■ 60
SYNE2-224ENST00000557024 ST5P78524 1137 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 CCDC93Q567U6 631 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 TTC5Q8N0Z6 440 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 MASTLQ96GX5 879 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
SYNE2-224ENST00000557024 ZNF277Q9NRM2 450 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-224ENST00000557024 RNF123Q5XPI4 1314 aa12.65□□□□□ -0.38
SYNE2-224ENST00000557024 MTHFSDQ2M296 383 aaKnown RBP12.65□□□□□ -0.38
SYNE2-224ENST00000557024 OLFM4Q6UX06 510 aa12.65□□□□□ -0.38
SYNE2-224ENST00000557024 C7orf43Q8WVR3 580 aa12.65□□□□□ -0.38
SYNE2-224ENST00000557024 ZNF496Q96IT1 587 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-224ENST00000557024 PCDH10Q9P2E7 1040 aa12.65□□□□□ -0.38
SYNE2-224ENST00000557024 ECM2O94769 699 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-224ENST00000557024 CAMTA2O94983 1202 aa12.64□□□□□ -0.39
SYNE2-224ENST00000557024 FKBP4Q02790 459 aaKnown RBP eCLIP12.64□□□□□ -0.39
SYNE2-224ENST00000557024 GRM1Q13255 1194 aa12.64□□□□□ -0.39
SYNE2-224ENST00000557024 PAXIP1Q6ZW49 1069 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-224ENST00000557024 PNMA8AQ86V59 439 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-224ENST00000557024 DICER1Q9UPY3 1922 aaKnown RBP12.64□□□□□ -0.39
SYNE2-224ENST00000557024 SLX4Q8IY92 1834 aa12.63□□□□□ -0.39
SYNE2-224ENST00000557024 IL6STP40189 918 aaPredicted RBP12.63□□□□□ -0.39
SYNE2-224ENST00000557024 RGS19P49795 217 aa12.63□□□□□ -0.39
SYNE2-224ENST00000557024 SPDYE1Q8NFV5 336 aaPredicted RBP12.63□□□□□ -0.39
SYNE2-224ENST00000557024 CAPNS2Q96L46 248 aa12.63□□□□□ -0.39
SYNE2-224ENST00000557024 HEG1Q9ULI3 1381 aa12.63□□□□□ -0.39
SYNE2-224ENST00000557024 SCN7AQ01118 1682 aa12.63□□□□□ -0.39
SYNE2-224ENST00000557024 A1BGP04217 495 aa12.62□□□□□ -0.39
SYNE2-224ENST00000557024 ZEB1P37275 1124 aaPredicted RBP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 FMR1Q06787 632 aaKnown RBP eCLIP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 NPM2Q86SE8 214 aaKnown RBP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 NBPF5PQ86XG9 351 aaPredicted RBP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 CFAP44Q96MT7 982 aa12.62□□□□□ -0.39
SYNE2-224ENST00000557024 BEGAINQ9BUH8 593 aa12.62□□□□□ -0.39
SYNE2-224ENST00000557024 DDX21Q9NR30 783 aaKnown RBP eCLIP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 TSKSQ9UJT2 592 aa12.62□□□□□ -0.39
SYNE2-224ENST00000557024 VIRMAQ69YN4 1812 aaKnown RBP12.62□□□□□ -0.39
SYNE2-224ENST00000557024 ADAMTSL1Q8N6G6 1762 aa12.61□□□□□ -0.39
SYNE2-224ENST00000557024 SCN4AP35499 1836 aa12.61□□□□□ -0.39
SYNE2-224ENST00000557024 NPR1P16066 1061 aa12.61□□□□□ -0.39
SYNE2-224ENST00000557024 CYP4F22Q6NT55 531 aa12.61□□□□□ -0.39
SYNE2-224ENST00000557024 ZNF790Q6PG37 636 aa12.61□□□□□ -0.39
SYNE2-224ENST00000557024 DZIP3Q86Y13 1208 aaKnown RBP12.61□□□□□ -0.39
SYNE2-224ENST00000557024 GPR101Q96P66 508 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-224ENST00000557024 TEX13AQ9BXU3 409 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-224ENST00000557024 FZD9O00144 591 aa12.6□□□□□ -0.39
SYNE2-224ENST00000557024 IARSP41252 1262 aaKnown RBP12.6□□□□□ -0.39
SYNE2-224ENST00000557024 ECE1P42892 770 aa12.6□□□□□ -0.39
SYNE2-224ENST00000557024 TEFQ10587 303 aa12.6□□□□□ -0.39
SYNE2-224ENST00000557024 RTKN2Q8IZC4 609 aa12.6□□□□□ -0.39
SYNE2-224ENST00000557024 GPC2Q8N158 579 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms