RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 DPEP1P16444 411 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 DALRD3Q5D0E6 543 aaKnown RBP9.63□□□□□ -0.87
SCFD1-222ENST00000556768 BICDL1Q6ZP65 573 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 PLEKHF1Q96S99 279 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 KCNQ3O43525 872 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 SERPINB2P05120 415 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 RIPK4P57078 832 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 NFIXQ14938 502 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 ARHGAP27Q6ZUM4 889 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 TAF1LQ8IZX4 1826 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 SETDB2Q96T68 719 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 TBC1D2BQ9UPU7 963 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 ZNF652Q9Y2D9 606 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 USP16Q9Y5T5 823 aa9.62□□□□□ -0.87
SCFD1-222ENST00000556768 ZNF831Q5JPB2 1677 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 DDR1Q08345 913 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 DZIP3Q86Y13 1208 aaKnown RBP9.61□□□□□ -0.87
SCFD1-222ENST00000556768 MIS18AQ9NYP9 233 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 H0YIN7 160 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 GIGYF1O75420 1035 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-222ENST00000556768 ZC3H15Q8WU90 426 aaKnown RBP9.61□□□□□ -0.87
SCFD1-222ENST00000556768 GPBP1L1Q9HC44 474 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-222ENST00000556768 PDZRN3Q9UPQ7 1066 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 UBR3Q6ZT12 1888 aa9.61□□□□□ -0.87
SCFD1-222ENST00000556768 KCPQ6ZWJ8 1503 aa9.6□□□□□ -0.87
SCFD1-222ENST00000556768 TUBGCP6Q96RT7 1819 aa9.6□□□□□ -0.87
SCFD1-222ENST00000556768 CLEC4GQ6UXB4 293 aa9.6□□□□□ -0.87
SCFD1-222ENST00000556768 CLEC11AQ9Y240 323 aa9.6□□□□□ -0.87
SCFD1-222ENST00000556768 C10orf71Q711Q0 1435 aa9.6□□□□□ -0.87
SCFD1-222ENST00000556768 PDE6BP35913 854 aa9.59□□□□□ -0.87
SCFD1-222ENST00000556768 NEUROD2Q15784 382 aa9.59□□□□□ -0.87
SCFD1-222ENST00000556768 PRKRIP1Q9H875 184 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-222ENST00000556768 TSPYL4Q9UJ04 414 aa9.59□□□□□ -0.87
SCFD1-222ENST00000556768 SCN11AQ9UI33 1791 aa9.59□□□□□ -0.87
SCFD1-222ENST00000556768 CICQ96RK0 1608 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-222ENST00000556768 TMPOP42166 694 aaKnown RBP9.59□□□□□ -0.88
SCFD1-222ENST00000556768 ST5P78524 1137 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 TBC1D9BQ66K14 1250 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 CNBD1Q8NA66 436 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 RUNDC1Q96C34 613 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 BCL2L12Q9HB09 334 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 BABAM1Q9NWV8 329 aa9.59□□□□□ -0.88
SCFD1-222ENST00000556768 COL24A1Q17RW2 1714 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 PRAMEF22A3QJZ6 481 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 KCNA3P22001 575 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 GTF2E1P29083 439 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-222ENST00000556768 CHRNA5P30532 468 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 TPTE2Q6XPS3 522 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 NBPF5PQ86XG9 351 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-222ENST00000556768 C2CD5Q86YS7 1000 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 TTLL6Q8N841 843 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 THUMPD2Q9BTF0 503 aaKnown RBP9.58□□□□□ -0.88
SCFD1-222ENST00000556768 BRIP1Q9BX63 1249 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 PXDNLA1KZ92 1463 aa9.58□□□□□ -0.88
SCFD1-222ENST00000556768 CARMIL3Q8ND23 1372 aa9.57□□□□□ -0.88
SCFD1-222ENST00000556768 CAMTA2O94983 1202 aa9.57□□□□□ -0.88
SCFD1-222ENST00000556768 PIP4K2AP48426 406 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-222ENST00000556768 EIF4A1P60842 406 aaKnown RBP9.57□□□□□ -0.88
SCFD1-222ENST00000556768 ZNF526Q8TF50 670 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-222ENST00000556768 ADAMTS8Q9UP79 889 aa9.57□□□□□ -0.88
SCFD1-222ENST00000556768 RRP7AQ9Y3A4 280 aaKnown RBP9.57□□□□□ -0.88
SCFD1-222ENST00000556768 C1QTNF8P60827 252 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 KIF6Q6ZMV9 814 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 CCDC146Q8IYE0 955 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 NGEFQ8N5V2 710 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 ZNF622Q969S3 477 aaKnown RBP eCLIP9.56□□□□□ -0.883e-6■□□□□ 8.1
SCFD1-222ENST00000556768 NIP7Q9Y221 180 aaKnown RBP eCLIP9.56□□□□□ -0.88
SCFD1-222ENST00000556768 CEP350Q5VT06 3117 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 LAS1LQ9Y4W2 734 aaKnown RBP9.56□□□□□ -0.88
SCFD1-222ENST00000556768 ADAMTS7Q9UKP4 1686 aa9.56□□□□□ -0.88
SCFD1-222ENST00000556768 COL5A3P25940 1745 aaPredicted RBP9.55□□□□□ -0.88
SCFD1-222ENST00000556768 MYL6BP14649 208 aa9.55□□□□□ -0.88
SCFD1-222ENST00000556768 EIF2S2P20042 333 aaKnown RBP9.55□□□□□ -0.88
SCFD1-222ENST00000556768 CALD1Q05682 793 aaKnown RBP9.55□□□□□ -0.88
SCFD1-222ENST00000556768 PRR5LQ6MZQ0 368 aa9.55□□□□□ -0.88
SCFD1-222ENST00000556768 MYH14Q7Z406 1995 aaKnown RBP9.55□□□□□ -0.88
SCFD1-222ENST00000556768 NBPF26B4DH59 902 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ERVV-1B6SEH8 477 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 C9orf131Q5VYM1 1079 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 NBPF10Q6P3W6 841 aaKnown RBP9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ZNF467Q7Z7K2 595 aaPredicted RBP9.54□□□□□ -0.88
SCFD1-222ENST00000556768 NBPF15Q8N660 670 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 CNKSR1Q969H4 720 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 NYXQ9GZU5 481 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ERBB4Q15303 1308 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ATP10DQ9P241 1426 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 C4AP0C0L4 1744 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 TJP1Q07157 1748 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ZNF316A6NFI3 1004 aaPredicted RBP9.54□□□□□ -0.88
SCFD1-222ENST00000556768 ANP32CO43423 234 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 SOGA3Q5TF21 947 aa9.54□□□□□ -0.88
SCFD1-222ENST00000556768 FAM177BA6PVY3 158 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 PDAP1Q13442 181 aaKnown RBP9.53□□□□□ -0.88
SCFD1-222ENST00000556768 CCDC24Q8N4L8 307 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 MASTLQ96GX5 879 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 CHMP4AQ9BY43 222 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 MFRPQ9BY79 579 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 SLC24A3Q9HC58 644 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 RNF181Q9P0P0 153 aa9.53□□□□□ -0.88
SCFD1-222ENST00000556768 TESPA1A2RU30 521 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms