RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	CCDC24	Q8N4L8	307 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	PANK3	Q9H999	370 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	SLC52A2	Q9HAB3	445 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	MKRN1	Q9UHC7	482 aa	Known RBP	11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	DLEC1	Q9Y238	1755 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	COL15A1	P39059	1388 aa		11.85	□□□□□ -0.51
SYNE2-222	ENST00000556725	IL13	P35225	146 aa		11.85	□□□□□ -0.51
SYNE2-222	ENST00000556725	KIF12	Q96FN5	646 aa		11.85	□□□□□ -0.51
SYNE2-222	ENST00000556725	RNMT	O43148	476 aa	Known RBP	11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	C21orf2	O43822	256 aa		11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	CANX	P27824	592 aa	Known RBP	11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	AKAP4	Q5JQC9	854 aa		11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	DPY19L2	Q6NUT2	758 aa		11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.84	□□□□□ -0.51
SYNE2-222	ENST00000556725	FOXN1	O15353	648 aa		11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	DDN	O94850	711 aa	Predicted RBP	11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	ERFE	Q4G0M1	354 aa		11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	TBC1D9B	Q66K14	1250 aa		11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	MORC1	Q86VD1	984 aa		11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	VIRMA	Q69YN4	1812 aa	Known RBP	11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	ANKRD31	Q8N7Z5	1873 aa		11.83	□□□□□ -0.52
SYNE2-222	ENST00000556725	DICER1	Q9UPY3	1922 aa	Known RBP	11.82	□□□□□ -0.52
SYNE2-222	ENST00000556725	FER1L6	Q2WGJ9	1857 aa		11.82	□□□□□ -0.52
SYNE2-222	ENST00000556725	HMOX1	P09601	288 aa		11.81	□□□□□ -0.52
SYNE2-222	ENST00000556725	EIF5	P55010	431 aa	Known RBP	11.81	□□□□□ -0.52
SYNE2-222	ENST00000556725	MTHFSD	Q2M296	383 aa	Known RBP	11.8	□□□□□ -0.52
SYNE2-222	ENST00000556725	PRR5L	Q6MZQ0	368 aa		11.8	□□□□□ -0.52
SYNE2-222	ENST00000556725	BRIP1	Q9BX63	1249 aa		11.8	□□□□□ -0.52
SYNE2-222	ENST00000556725	SLX4	Q8IY92	1834 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	MRC1	P22897	1456 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	TIE1	P35590	1138 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	PDE6B	P35913	854 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	VSIG10	Q8N0Z9	540 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	TBC1D2B	Q9UPU7	963 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	COL11A2	P13942	1736 aa	Predicted RBP	11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	CNTNAP1	P78357	1384 aa		11.79	□□□□□ -0.52
SYNE2-222	ENST00000556725	VEGFB	P49765	207 aa		11.78	□□□□□ -0.52
SYNE2-222	ENST00000556725	TAOK3	Q9H2K8	898 aa		11.78	□□□□□ -0.52
SYNE2-222	ENST00000556725	PRDM10	Q9NQV6	1147 aa		11.78	□□□□□ -0.52
SYNE2-222	ENST00000556725	CACNA1S	Q13698	1873 aa		11.78	□□□□□ -0.52
SYNE2-222	ENST00000556725	STARD3NL	O95772	234 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	HSPA5	P11021	654 aa	Known RBP	11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	CDAN1	Q8IWY9	1227 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	ZNF496	Q96IT1	587 aa	Predicted RBP	11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	TRPC6	Q9Y210	931 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	PASK	Q96RG2	1323 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	LTBP3	Q9NS15	1303 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725	UBR2	Q8IWV8	1755 aa		11.77	□□□□□ -0.53
SYNE2-222	ENST00000556725		A0A087WZG4	1122 aa		11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	ITGBL1	O95965	494 aa	Predicted RBP	11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	SRGN	P10124	158 aa		11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	LBX1	P52954	281 aa		11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	PRPF40B	Q6NWY9	871 aa	Known RBP	11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	PDZRN3	Q9UPQ7	1066 aa		11.76	□□□□□ -0.53
SYNE2-222	ENST00000556725	CAMTA2	O94983	1202 aa		11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	A1BG	P04217	495 aa		11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	CTCF	P49711	727 aa	Predicted RBP	11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	LDHD	Q86WU2	507 aa		11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	CNKSR1	Q969H4	720 aa		11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	WBP1L	Q9NX94	342 aa		11.75	□□□□□ -0.53
SYNE2-222	ENST00000556725	TMEM88B	A6NKF7	163 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	EAPP	Q56P03	285 aa	Predicted RBP	11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	STYK1	Q6J9G0	422 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	OLFM4	Q6UX06	510 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	TTC5	Q8N0Z6	440 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	CNBD1	Q8NA66	436 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	IL17RE	Q8NFR9	667 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	C7orf43	Q8WVR3	580 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	SETDB2	Q96T68	719 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	KNSTRN	Q9Y448	316 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	HEG1	Q9ULI3	1381 aa		11.74	□□□□□ -0.53
SYNE2-222	ENST00000556725	IQCA1L	A6NCM1	817 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	NPHP1	O15259	732 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	KCNQ3	O43525	872 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	SCN4A	P35499	1836 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	IL6ST	P40189	918 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	PIP4K2A	P48426	406 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	SCN7A	Q01118	1682 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	ZNF790	Q6PG37	636 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	AIDA	Q96BJ3	306 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	MASTL	Q96GX5	879 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	ZNF541	Q9H0D2	1346 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	TIMELESS	Q9UNS1	1208 aa		11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	COLQ	Q9Y215	455 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-222	ENST00000556725	MAP3K13	O43283	966 aa		11.72	□□□□□ -0.53
SYNE2-222	ENST00000556725	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.72	□□□□□ -0.53
SYNE2-222	ENST00000556725	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.72	□□□□□ -0.53
SYNE2-222	ENST00000556725	DIAPH1	O60610	1272 aa	Known RBP	11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	SLC34A2	O95436	690 aa		11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	HSPA8	P11142	646 aa	Known RBP	11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	ST5	P78524	1137 aa		11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	DEFB115	Q30KQ5	88 aa		11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	MAP1S	Q66K74	1059 aa	Predicted RBP	11.71	□□□□□ -0.53

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