RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 APBA3O96018 575 aa12.87□□□□□ -0.35
SRP54-208ENST00000555557 IL6STP40189 918 aaPredicted RBP12.87□□□□□ -0.35
SRP54-208ENST00000555557 METTL22Q9BUU2 404 aaPredicted RBP12.87□□□□□ -0.35
SRP54-208ENST00000555557 TBC1D2BQ9UPU7 963 aa12.87□□□□□ -0.35
SRP54-208ENST00000555557 ATP5J2-PTCD1G3V325 749 aa12.86□□□□□ -0.35
SRP54-208ENST00000555557 IGHDP01880 384 aa12.86□□□□□ -0.35
SRP54-208ENST00000555557 IGKV5-2P06315 115 aa12.86□□□□□ -0.35
SRP54-208ENST00000555557 EIF5P55010 431 aaKnown RBP12.86□□□□□ -0.35
SRP54-208ENST00000555557 USP44Q9H0E7 712 aa12.86□□□□□ -0.35
SRP54-208ENST00000555557 NPM2Q86SE8 214 aaKnown RBP12.86□□□□□ -0.35
SRP54-208ENST00000555557 PROM2Q8N271 834 aa12.86□□□□□ -0.35
SRP54-208ENST00000555557 NEXNQ0ZGT2 675 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 AAMPQ13685 434 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 HLFQ16534 295 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 KIF6Q6ZMV9 814 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 DZIP3Q86Y13 1208 aaKnown RBP12.85□□□□□ -0.35
SRP54-208ENST00000555557 LINS1Q8NG48 757 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 PXDNLA1KZ92 1463 aa12.85□□□□□ -0.35
SRP54-208ENST00000555557 NBPF7P0C2Y1 421 aaPredicted RBP12.84□□□□□ -0.35
SRP54-208ENST00000555557 CHMP4BQ9H444 224 aaKnown RBP12.84□□□□□ -0.35
SRP54-208ENST00000555557 ATP10DQ9P241 1426 aa12.84□□□□□ -0.35
SRP54-208ENST00000555557 MYH14Q7Z406 1995 aaKnown RBP12.84□□□□□ -0.35
SRP54-208ENST00000555557 NEURL1BA8MQ27 555 aa12.84□□□□□ -0.35
SRP54-208ENST00000555557 TXNRD1Q16881 649 aa12.84□□□□□ -0.35
SRP54-208ENST00000555557 MAP3K15Q6ZN16 1313 aa12.84□□□□□ -0.35
SRP54-208ENST00000555557 AMIGO3Q86WK7 504 aa12.84□□□□□ -0.35
SRP54-208ENST00000555557 CNTNAP4Q9C0A0 1308 aa12.83□□□□□ -0.36
SRP54-208ENST00000555557 GNPATO15228 680 aa12.83□□□□□ -0.36
SRP54-208ENST00000555557 ALDH1L1O75891 902 aa12.83□□□□□ -0.36
SRP54-208ENST00000555557 JARID2Q92833 1246 aaPredicted RBP12.83□□□□□ -0.36
SRP54-208ENST00000555557 PLSCR1O15162 318 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 GNAI3P08754 354 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 UBTFL1P0CB47 393 aaPredicted RBP12.82□□□□□ -0.36
SRP54-208ENST00000555557 SLC27A3Q5K4L6 730 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 RC3H1Q5TC82 1133 aaKnown RBP12.82□□□□□ -0.36
SRP54-208ENST00000555557 SIRT2Q8IXJ6 389 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 C9orf78Q9NZ63 289 aaPredicted RBP12.82□□□□□ -0.36
SRP54-208ENST00000555557 LY75O60449 1722 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 TCIRG1Q13488 830 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 GCKRQ14397 625 aa12.82□□□□□ -0.36
SRP54-208ENST00000555557 GIGYF2Q6Y7W6 1299 aaKnown RBP12.82□□□□□ -0.36
SRP54-208ENST00000555557 LRRFIP2Q9Y608 721 aaKnown RBP12.82□□□□□ -0.36
SRP54-208ENST00000555557 COL5A3P25940 1745 aaPredicted RBP12.81□□□□□ -0.36
SRP54-208ENST00000555557 COL15A1P39059 1388 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 ZNF831Q5JPB2 1677 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 KDM2BQ8NHM5 1336 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 CICQ96RK0 1608 aaPredicted RBP12.81□□□□□ -0.36
SRP54-208ENST00000555557 RPS6KA4O75676 772 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 PHF14O94880 888 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 GNAI2P04899 355 aa12.81□□□□□ -0.36
SRP54-208ENST00000555557 GRM8O00222 908 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 CAMTA2O94983 1202 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 GPTP24298 496 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 RTL5Q5HYW3 569 aaPredicted RBP12.8□□□□□ -0.36
SRP54-208ENST00000555557 AK7Q96M32 723 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 RWDD1Q9H446 243 aaPredicted RBP12.8□□□□□ -0.36
SRP54-208ENST00000555557 RTCBQ9Y3I0 505 aaKnown RBP12.8□□□□□ -0.36
SRP54-208ENST00000555557 A0A087WZG4 1122 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 ERVV-1B6SEH8 477 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 EN1Q05925 392 aaPredicted RBP12.8□□□□□ -0.36
SRP54-208ENST00000555557 CEP85Q6P2H3 762 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 ISCA1Q9BUE6 129 aa12.8□□□□□ -0.36
SRP54-208ENST00000555557 ARFGEF2Q9Y6D5 1785 aa12.79□□□□□ -0.36
SRP54-208ENST00000555557 SKAP1Q86WV1 359 aa12.79□□□□□ -0.36
SRP54-208ENST00000555557 ARHGEF1Q92888 912 aaKnown RBP12.79□□□□□ -0.36
SRP54-208ENST00000555557 CWC25Q9NXE8 425 aaPredicted RBP12.79□□□□□ -0.36
SRP54-208ENST00000555557 RREB1Q92766 1687 aa12.79□□□□□ -0.36
SRP54-208ENST00000555557 HDAC1Q13547 482 aaPredicted RBP12.78□□□□□ -0.36
SRP54-208ENST00000555557 EZH2Q15910 746 aaKnown RBP12.78□□□□□ -0.36
SRP54-208ENST00000555557 CENPQQ7L2Z9 268 aaPredicted RBP12.78□□□□□ -0.36
SRP54-208ENST00000555557 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 ANKRD44Q8N8A2 993 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 SUCLG2Q96I99 432 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 SRP68Q9UHB9 627 aaKnown RBP12.78□□□□□ -0.36
SRP54-208ENST00000555557 UTYO14607 1347 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 NUP188Q5SRE5 1749 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 RPAP2Q8IXW5 612 aaPredicted RBP12.78□□□□□ -0.36
SRP54-208ENST00000555557 CCDC191Q8NCU4 936 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 KAZALD1Q96I82 304 aa12.78□□□□□ -0.36
SRP54-208ENST00000555557 C4BP0C0L5 1744 aa12.77□□□□□ -0.36
SRP54-208ENST00000555557 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.77□□□□□ -0.37
SRP54-208ENST00000555557 PNMA6EA0A0J9YXQ4 647 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 HSP90AB3PQ58FF7 597 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 TRAPPC3LQ5T215 181 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 USPL1Q5W0Q7 1092 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 DEFB132Q7Z7B7 95 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 NLRP10Q86W26 655 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 TAF1LQ8IZX4 1826 aa12.77□□□□□ -0.37
SRP54-208ENST00000555557 N4BP2Q86UW6 1770 aaPredicted RBP12.76□□□□□ -0.37
SRP54-208ENST00000555557 FAM177BA6PVY3 158 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 H7C1W4 665 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 CASP7P55210 303 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 TRIM28Q13263 835 aaKnown RBP12.76□□□□□ -0.37
SRP54-208ENST00000555557 ZNF827Q17R98 1081 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 ZNF34Q8IZ26 560 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 SYNE4Q8N205 404 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 FAM89AQ96GI7 184 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 CAMKK2Q96RR4 588 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 BCL2L12Q9HB09 334 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 UBN2Q6ZU65 1347 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms