RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 UBE2HP62256 183 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 POLA2Q14181 598 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 FERMT3Q86UX7 667 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 FAM184AQ8NB25 1140 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 PLEKHG1Q9ULL1 1385 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 GOLGA6L4A6NEF3 574 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 PTH1RQ03431 593 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 DNM1Q05193 864 aaKnown RBP11.38□□□□□ -0.59
SYNE2-213ENST00000554805 G3BP1Q13283 466 aaKnown RBP eCLIP11.38□□□□□ -0.59
SYNE2-213ENST00000554805 ESCO1Q5FWF5 840 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 C1orf141Q5JVX7 400 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 TTC12Q9H892 705 aaPredicted RBP11.38□□□□□ -0.59
SYNE2-213ENST00000554805 ECHDC1Q9NTX5 307 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 BEND3Q5T5X7 828 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 CCDC8Q9H0W5 538 aaPredicted RBP11.38□□□□□ -0.59
SYNE2-213ENST00000554805 SIL1Q9H173 461 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 MAP3K2Q9Y2U5 619 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 TBX22Q9Y458 520 aa11.38□□□□□ -0.59
SYNE2-213ENST00000554805 LETM1O95202 739 aaPredicted RBP11.37□□□□□ -0.59
SYNE2-213ENST00000554805 LARGE1O95461 756 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 PSME1Q06323 249 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 SASS6Q6UVJ0 657 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 LRRC59Q96AG4 307 aaKnown RBP11.37□□□□□ -0.59
SYNE2-213ENST00000554805 NBPF6Q5VWK0 638 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 C17orf53Q8N3J3 647 aaPredicted RBP11.37□□□□□ -0.59
SYNE2-213ENST00000554805 NBPF4Q96M43 638 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 TCEANC2Q96MN5 208 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 BABAM1Q9NWV8 329 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 PTPRUQ92729 1446 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 NRKQ7Z2Y5 1582 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 CWF19L2Q2TBE0 894 aaKnown RBP11.37□□□□□ -0.59
SYNE2-213ENST00000554805 ADCK5Q3MIX3 580 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 SPC24Q8NBT2 197 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 ZMYND15Q9H091 742 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 SETD1AO15047 1707 aaKnown RBP11.37□□□□□ -0.59
SYNE2-213ENST00000554805 PEAK1Q9H792 1746 aa11.37□□□□□ -0.59
SYNE2-213ENST00000554805 RIMS1Q86UR5 1692 aaKnown RBP11.36□□□□□ -0.59
SYNE2-213ENST00000554805 UVSSAQ2YD98 709 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 PLEKHO1Q53GL0 409 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-213ENST00000554805 LARP1BQ659C4 914 aaKnown RBP11.36□□□□□ -0.59
SYNE2-213ENST00000554805 ZSCAN31Q96LW9 406 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-213ENST00000554805 FSD1Q9BTV5 496 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 BOLA2Q9H3K6 86 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 TERF1P54274 439 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 TTC14Q96N46 770 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 DBF4Q9UBU7 674 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-213ENST00000554805 HDAC5Q9UQL6 1122 aa11.36□□□□□ -0.59
SYNE2-213ENST00000554805 RPAP1Q9BWH6 1393 aaPredicted RBP11.35□□□□□ -0.59
SYNE2-213ENST00000554805 EPB41L2O43491 1005 aaKnown RBP11.35□□□□□ -0.59
SYNE2-213ENST00000554805 STK3Q13188 491 aa11.35□□□□□ -0.59
SYNE2-213ENST00000554805 ERC1Q8IUD2 1116 aa11.35□□□□□ -0.59
SYNE2-213ENST00000554805 RBM8AQ9Y5S9 174 aaKnown RBP11.35□□□□□ -0.59
SYNE2-213ENST00000554805 TTC41PQ6P2S7 1318 aa11.35□□□□□ -0.59
SYNE2-213ENST00000554805 AKAP12Q02952 1782 aa11.35□□□□□ -0.59
SYNE2-213ENST00000554805 PROSER2Q86WR7 435 aaPredicted RBP11.35□□□□□ -0.59
SYNE2-213ENST00000554805 CCDC9Q9Y3X0 531 aaKnown RBP11.35□□□□□ -0.59
SYNE2-213ENST00000554805 FAM173BQ6P4H8 233 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 SH2B1Q9NRF2 756 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-213ENST00000554805 HYPKQ9NX55 129 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-213ENST00000554805 CAMK4Q16566 473 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 DRC7Q8IY82 874 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 EVI5LQ96CN4 794 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 FAM227BQ96M60 508 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 NOLC1Q14978 699 aaKnown RBP eCLIP11.34□□□□□ -0.59
SYNE2-213ENST00000554805 PROSER3Q2NL68 480 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 RIC3Q7Z5B4 369 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 IP6K1Q92551 441 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 DDX17Q92841 729 aaKnown RBP11.34□□□□□ -0.59
SYNE2-213ENST00000554805 MAP7D2Q96T17 732 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 MTMR6Q9Y217 621 aa11.34□□□□□ -0.59
SYNE2-213ENST00000554805 PSMA5P28066 241 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 FGD1P98174 961 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 NMIQ13287 307 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-213ENST00000554805 VPS53Q5VIR6 699 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 TFIP11Q9UBB9 837 aaKnown RBP11.33□□□□□ -0.6
SYNE2-213ENST00000554805 KRT85P78386 507 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 ME3Q16798 604 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 CREB3L3Q68CJ9 461 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 BLOC1S2Q6QNY1 142 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 DYNC1I1O14576 645 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 KDM4AO75164 1064 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 DDX58O95786 925 aaKnown RBP11.33□□□□□ -0.6
SYNE2-213ENST00000554805 CCDC192P0DO97 292 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 RNF20Q5VTR2 975 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 KSR2Q6VAB6 950 aa11.33□□□□□ -0.6
SYNE2-213ENST00000554805 PRAMEF22A3QJZ6 481 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 HSP90B1P14625 803 aaKnown RBP11.32□□□□□ -0.6
SYNE2-213ENST00000554805 MYL6BP14649 208 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 TMEM87AQ8NBN3 555 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 TSC1Q92574 1164 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 CCDC171Q6TFL3 1326 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 AKAP4Q5JQC9 854 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 CKAP2LQ8IYA6 745 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 JARID2Q92833 1246 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-213ENST00000554805 NAP1L2Q9ULW6 460 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-213ENST00000554805 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-213ENST00000554805 ALDH1L1O75891 902 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 HOXB7P09629 217 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms