RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	RAB11FIP3	O75154	756 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	LIMCH1	Q9UPQ0	1083 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	CABLES1	Q8TDN4	633 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	RAPGEF4	Q8WZA2	1011 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	NOL7	Q9UMY1	257 aa	Known RBP	13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	BRD1	O95696	1058 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	NEXN	Q0ZGT2	675 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	FAM227B	Q96M60	508 aa		13.67	□□□□□ -0.22
PTPN21-205	ENST00000554270	ZRSR1	Q15695	479 aa	Known RBP	13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	FAM184A	Q8NB25	1140 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	TRIM5	Q9C035	493 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	IGSF1	Q8N6C5	1336 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	NPHP1	O15259	732 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	PTH1R	Q03431	593 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	CHRNA2	Q15822	529 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	SNX14	Q9Y5W7	946 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	GLRX3	O76003	335 aa	Known RBP	13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	HSP90AB4P	Q58FF6	505 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	MYD88	Q99836	296 aa		13.66	□□□□□ -0.22
PTPN21-205	ENST00000554270	USP32	Q8NFA0	1604 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	ZSCAN22	P10073	491 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	ADCK5	Q3MIX3	580 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	PDCL3	Q9H2J4	239 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	DBF4	Q9UBU7	674 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	CLTC	Q00610	1675 aa	Known RBP	13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	CRB1	P82279	1406 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	EIF4A1	P60842	406 aa	Known RBP	13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	CBX1	P83916	185 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	CCDC183	Q5T5S1	534 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	ECHDC1	Q9NTX5	307 aa		13.65	□□□□□ -0.22
PTPN21-205	ENST00000554270	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	ANKRD24	Q8TF21	1146 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	NCOA3	Q9Y6Q9	1424 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	LARGE1	O95461	756 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	DDX58	O95786	925 aa	Known RBP	13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	GUCY1B3	Q02153	619 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	TTC5	Q8N0Z6	440 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	PDE4C	Q08493	712 aa		13.64	□□□□□ -0.23
PTPN21-205	ENST00000554270	SGSM2	O43147	1006 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	RGS12	O14924	1447 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	IGSF3	O75054	1194 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	SSH3	Q8TE77	659 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	FMNL2	Q96PY5	1086 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	TBX22	Q9Y458	520 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	SPDYE4	A6NLX3	237 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	BLOC1S2	Q6QNY1	142 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	OSBPL3	Q9H4L5	887 aa		13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	BICC1	Q9H694	974 aa	Known RBP	13.63	□□□□□ -0.23
PTPN21-205	ENST00000554270	NFATC2IP	Q8NCF5	419 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	ARHGEF10	O15013	1369 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	GC	P02774	474 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	PROSER2	Q86WR7	435 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	TNMD	Q9H2S6	317 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	TLR7	Q9NYK1	1049 aa	Known RBP	13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	NMI	Q13287	307 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	COPS6	Q7L5N1	327 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	UBE3B	Q7Z3V4	1068 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	RBM8A	Q9Y5S9	174 aa	Known RBP	13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	KIF24	Q5T7B8	1368 aa		13.62	□□□□□ -0.23
PTPN21-205	ENST00000554270	GOLGA6L6	A8MZA4	724 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	F13A1	P00488	732 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	CYP2E1	P05181	493 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	BEND3	Q5T5X7	828 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	SASS6	Q6UVJ0	657 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	ANKLE2	Q86XL3	938 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	BECN2	A8MW95	431 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	HSPA4	P34932	840 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	KRT85	P78386	507 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	RUFY3	Q7L099	469 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	STK11IP	Q8N1F8	1099 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	SPATA32	Q96LK8	384 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	XAGE3	Q8WTP9	111 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	SIRT1	Q96EB6	747 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	SUCLG2	Q96I99	432 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	GOLGA6L19	H0YKK7	550 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	CHGB	P05060	677 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	CCDC192	P0DO97	292 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	CCDC129	Q6ZRS4	1044 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	DDX46	Q7L014	1031 aa	Known RBP	13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	RAB11FIP4	Q86YS3	637 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	IP6K1	Q92551	441 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	C16orf45	Q96MC5	204 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	NUP62CL	Q9H1M0	184 aa		13.61	□□□□□ -0.23
PTPN21-205	ENST00000554270	GORAB	Q5T7V8	394 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	LUZP1	Q86V48	1076 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	UBE2H	P62256	183 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	FILIP1	Q7Z7B0	1213 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	VIRMA	Q69YN4	1812 aa	Known RBP	13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	ANAPC15	P60006	121 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	RNF20	Q5VTR2	975 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	PI4K2B	Q8TCG2	481 aa		13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	EAF2	Q96CJ1	260 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN21-205	ENST00000554270	GRM8	O00222	908 aa		13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	HTATSF1	O43719	755 aa	Known RBP	13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	KSR2	Q6VAB6	950 aa		13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	RAD50	Q92878	1312 aa		13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	RNMT	O43148	476 aa	Known RBP	13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	CCT2	P78371	535 aa	Known RBP	13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms