RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 TIAM2Q8IVF5 1701 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 NFKBIEO00221 500 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 C21orf2O43822 256 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 A1BGP04217 495 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 PRR5LQ6MZQ0 368 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 DPY19L2Q6NUT2 758 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 RTF1Q92541 710 aaKnown RBP11.79□□□□□ -0.52
TDP1-208ENST00000553989 BRIP1Q9BX63 1249 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 RNF39Q9H2S5 420 aa11.79□□□□□ -0.52
TDP1-208ENST00000553989 CAPN15O75808 1086 aa11.78□□□□□ -0.52
TDP1-208ENST00000553989 U2AF1L5P0DN76 240 aaPredicted RBP11.78□□□□□ -0.52
TDP1-208ENST00000553989 VASPP50552 380 aaPredicted RBP11.78□□□□□ -0.52
TDP1-208ENST00000553989 U2AF1Q01081 240 aaKnown RBP eCLIP11.78□□□□□ -0.52
TDP1-208ENST00000553989 ERFEQ4G0M1 354 aa11.78□□□□□ -0.52
TDP1-208ENST00000553989 DZIP3Q86Y13 1208 aaKnown RBP11.78□□□□□ -0.52
TDP1-208ENST00000553989 KCNQ3O43525 872 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 CAMTA2O94983 1202 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 PIP4K2AP48426 406 aaPredicted RBP11.77□□□□□ -0.53
TDP1-208ENST00000553989 PRELPP51888 382 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 CNKSR1Q969H4 720 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 PHACTR3Q96KR7 559 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 RSPH6AQ9H0K4 717 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 TAOK3Q9H2K8 898 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 CEMIPQ8WUJ3 1361 aa11.77□□□□□ -0.53
TDP1-208ENST00000553989 SIPA1L3O60292 1781 aaPredicted RBP11.77□□□□□ -0.53
TDP1-208ENST00000553989 MCM10Q7L590 875 aa11.76□□□□□ -0.53
TDP1-208ENST00000553989 NBPF5PQ86XG9 351 aaPredicted RBP11.76□□□□□ -0.53
TDP1-208ENST00000553989 ZNF652Q9Y2D9 606 aa11.76□□□□□ -0.53
TDP1-208ENST00000553989 ANKRD31Q8N7Z5 1873 aa11.76□□□□□ -0.53
TDP1-208ENST00000553989 COL11A2P13942 1736 aaPredicted RBP11.75□□□□□ -0.53
TDP1-208ENST00000553989 SNRPA1P09661 255 aaKnown RBP11.75□□□□□ -0.53
TDP1-208ENST00000553989 SOGA3Q5TF21 947 aa11.75□□□□□ -0.53
TDP1-208ENST00000553989 STYK1Q6J9G0 422 aa11.75□□□□□ -0.53
TDP1-208ENST00000553989 PRPF40BQ6NWY9 871 aaKnown RBP11.75□□□□□ -0.53
TDP1-208ENST00000553989 MASTLQ96GX5 879 aa11.75□□□□□ -0.53
TDP1-208ENST00000553989 USP16Q9Y5T5 823 aa11.75□□□□□ -0.53
TDP1-208ENST00000553989 CCDC88AQ3V6T2 1871 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 PRAMEF22A3QJZ6 481 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 FAM177BA6PVY3 158 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 NEFMP07197 916 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 JMYQ8N9B5 988 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 BCORQ6W2J9 1755 aa11.74□□□□□ -0.53
TDP1-208ENST00000553989 SRGNP10124 158 aa11.73□□□□□ -0.53
TDP1-208ENST00000553989 PPP2R1AP30153 589 aa11.73□□□□□ -0.53
TDP1-208ENST00000553989 DCTN1Q14203 1278 aa11.73□□□□□ -0.53
TDP1-208ENST00000553989 CACNA1SQ13698 1873 aa11.72□□□□□ -0.53
TDP1-208ENST00000553989 LTBP3Q9NS15 1303 aa11.72□□□□□ -0.53
TDP1-208ENST00000553989 GTF2E1P29083 439 aaPredicted RBP11.72□□□□□ -0.53
TDP1-208ENST00000553989 CCDC93Q567U6 631 aa11.72□□□□□ -0.53
TDP1-208ENST00000553989 COL13A1Q5TAT6 717 aaPredicted RBP11.72□□□□□ -0.53
TDP1-208ENST00000553989 CLEC4GQ6UXB4 293 aa11.72□□□□□ -0.53
TDP1-208ENST00000553989 NIP7Q9Y221 180 aaKnown RBP eCLIP11.72□□□□□ -0.53
TDP1-208ENST00000553989 DDNO94850 711 aaPredicted RBP11.71□□□□□ -0.53
TDP1-208ENST00000553989 NPR1P16066 1061 aa11.71□□□□□ -0.53
TDP1-208ENST00000553989 TPTE2Q6XPS3 522 aa11.71□□□□□ -0.53
TDP1-208ENST00000553989 TNS4Q8IZW8 715 aa11.71□□□□□ -0.53
TDP1-208ENST00000553989 ZBTB12Q9Y330 459 aaPredicted RBP11.71□□□□□ -0.53
TDP1-208ENST00000553989 FER1L6Q2WGJ9 1857 aa11.71□□□□□ -0.53
TDP1-208ENST00000553989 SLX4Q8IY92 1834 aa11.7□□□□□ -0.54
TDP1-208ENST00000553989 IQCA1LA6NCM1 817 aa11.7□□□□□ -0.54
TDP1-208ENST00000553989 POTECB2RU33 542 aa11.7□□□□□ -0.54
TDP1-208ENST00000553989 HSPA1AP0DMV8 641 aaKnown RBP11.7□□□□□ -0.54
TDP1-208ENST00000553989 HSPA1BP0DMV9 641 aaKnown RBP11.7□□□□□ -0.54
TDP1-208ENST00000553989 C1QBPQ07021 282 aaKnown RBP11.7□□□□□ -0.54
TDP1-208ENST00000553989 CHADLQ6NUI6 762 aa11.7□□□□□ -0.54
TDP1-208ENST00000553989 NGEFQ8N5V2 710 aa11.7□□□□□ -0.54
TDP1-208ENST00000553989 DICER1Q9UPY3 1922 aaKnown RBP11.69□□□□□ -0.54
TDP1-208ENST00000553989 HTATSF1O43719 755 aaKnown RBP11.69□□□□□ -0.54
TDP1-208ENST00000553989 TAF7Q15545 349 aaPredicted RBP11.69□□□□□ -0.54
TDP1-208ENST00000553989 MIS18AQ9NYP9 233 aa11.69□□□□□ -0.54
TDP1-208ENST00000553989 NBPF26B4DH59 902 aa11.68□□□□□ -0.54
TDP1-208ENST00000553989 POTEIP0CG38 1075 aa11.68□□□□□ -0.54
TDP1-208ENST00000553989 POTEJP0CG39 1038 aa11.68□□□□□ -0.54
TDP1-208ENST00000553989 FKBP4Q02790 459 aaKnown RBP eCLIP11.68□□□□□ -0.54
TDP1-208ENST00000553989 EAPPQ56P03 285 aaPredicted RBP11.68□□□□□ -0.54
TDP1-208ENST00000553989 NBPF10Q6P3W6 841 aaKnown RBP11.68□□□□□ -0.54
TDP1-208ENST00000553989 NBPF15Q8N660 670 aa11.68□□□□□ -0.54
TDP1-208ENST00000553989 ZNF277Q9NRM2 450 aaPredicted RBP11.68□□□□□ -0.54
TDP1-208ENST00000553989 MKRN1Q9UHC7 482 aaKnown RBP11.68□□□□□ -0.54
TDP1-208ENST00000553989 ARFGEF2Q9Y6D5 1785 aa11.68□□□□□ -0.54
TDP1-208ENST00000553989 ALDH1B1P30837 517 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 HLFQ16534 295 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 KIF6Q6ZMV9 814 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 RTKN2Q8IZC4 609 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 PNISRQ8TF01 805 aaKnown RBP11.67□□□□□ -0.54
TDP1-208ENST00000553989 CREBZFQ9NS37 354 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 CLEC11AQ9Y240 323 aa11.67□□□□□ -0.54
TDP1-208ENST00000553989 ZNF541Q9H0D2 1346 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 MAPK8IP3Q9UPT6 1336 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 RGL2O15211 777 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 OLFM4Q6UX06 510 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 LDHDQ86WU2 507 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 IFNLR1Q8IU57 520 aaPredicted RBP11.66□□□□□ -0.54
TDP1-208ENST00000553989 RPGRQ92834 1020 aaKnown RBP11.66□□□□□ -0.54
TDP1-208ENST00000553989 NYXQ9GZU5 481 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 RRP7AQ9Y3A4 280 aaKnown RBP11.66□□□□□ -0.54
TDP1-208ENST00000553989 LAMB4A4D0S4 1761 aa11.66□□□□□ -0.54
TDP1-208ENST00000553989 MYL6BP14649 208 aa11.65□□□□□ -0.54
TDP1-208ENST00000553989 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
TDP1-208ENST00000553989 NUTM1Q86Y26 1132 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms