RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ERICH6BQ5W0A0 696 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 DNAAF4Q8WXU2 420 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 DDX19BQ9UMR2 479 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 ZNF330Q9Y3S2 320 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-210ENST00000553950 ADCY9O60503 1353 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 SSFA2P28290 1259 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 AIMP1Q12904 312 aaKnown RBP18.36■□□□□ 0.53
SHMT2-210ENST00000553950 HSP90AB3PQ58FF7 597 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 MAP3K15Q6ZN16 1313 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 ANKRD13DQ6ZTN6 518 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 RIC3Q7Z5B4 369 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 LRRC4BQ9NT99 713 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 ZNF652Q9Y2D9 606 aa18.36■□□□□ 0.53
SHMT2-210ENST00000553950 PI4KAP2A4QPH2 592 aa18.35■□□□□ 0.53
SHMT2-210ENST00000553950 ERVV-1B6SEH8 477 aa18.35■□□□□ 0.53
SHMT2-210ENST00000553950 PIP4K2AP48426 406 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-210ENST00000553950 MVPQ14764 893 aaKnown RBP18.35■□□□□ 0.53
SHMT2-210ENST00000553950 DZIP3Q86Y13 1208 aaKnown RBP18.35■□□□□ 0.53
SHMT2-210ENST00000553950 ITPRIPQ8IWB1 547 aa18.35■□□□□ 0.53
SHMT2-210ENST00000553950 PI4KAP1Q8N8J0 262 aa18.35■□□□□ 0.53
SHMT2-210ENST00000553950 CAMKK2Q96RR4 588 aa18.35■□□□□ 0.53
SHMT2-210ENST00000553950 INTS3Q68E01 1043 aaKnown RBP18.34■□□□□ 0.53
SHMT2-210ENST00000553950 FLAD1Q8NFF5 587 aa18.34■□□□□ 0.53
SHMT2-210ENST00000553950 CLUAP1Q96AJ1 413 aa18.34■□□□□ 0.53
SHMT2-210ENST00000553950 MAP3K2Q9Y2U5 619 aa18.34■□□□□ 0.53
SHMT2-210ENST00000553950 SLC4A10Q6U841 1118 aa18.33■□□□□ 0.52
SHMT2-210ENST00000553950 COL24A1Q17RW2 1714 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 ALDH1L1O75891 902 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 KCNQ4P56696 695 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 EN1Q05925 392 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-210ENST00000553950 PROM2Q8N271 834 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 TMEM57Q8N5G2 664 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 LINS1Q8NG48 757 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 PANK1Q8TE04 598 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 METTL22Q9BUU2 404 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-210ENST00000553950 SRCIN1Q9C0H9 1055 aa18.32■□□□□ 0.52
SHMT2-210ENST00000553950 F6X3S4 739 aa18.31■□□□□ 0.52
SHMT2-210ENST00000553950 EZH2Q15910 746 aaKnown RBP18.31■□□□□ 0.52
SHMT2-210ENST00000553950 TTLL7Q6ZT98 887 aa18.31■□□□□ 0.52
SHMT2-210ENST00000553950 HDAC5Q9UQL6 1122 aa18.31■□□□□ 0.52
SHMT2-210ENST00000553950 LAMB2P55268 1798 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 RLBP1P12271 317 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 TRAPPC3LQ5T215 181 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 C20orf194Q5TEA3 1177 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 CLEC4GQ6UXB4 293 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 GIGYF2Q6Y7W6 1299 aaKnown RBP18.3■□□□□ 0.52
SHMT2-210ENST00000553950 ARXQ96QS3 562 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 ZBTB3Q9H5J0 574 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 STK32BQ9NY57 414 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
SHMT2-210ENST00000553950 ZPR1O75312 459 aa18.29■□□□□ 0.52
SHMT2-210ENST00000553950 RFC4P35249 363 aa18.29■□□□□ 0.52
SHMT2-210ENST00000553950 AKT1S1Q96B36 256 aa18.29■□□□□ 0.52
SHMT2-210ENST00000553950 CRBNQ96SW2 442 aa18.29■□□□□ 0.52
SHMT2-210ENST00000553950 NARFQ9UHQ1 456 aa18.29■□□□□ 0.52
SHMT2-210ENST00000553950 USP42Q9H9J4 1324 aaKnown RBP18.28■□□□□ 0.52
SHMT2-210ENST00000553950 MYH3P11055 1940 aa18.28■□□□□ 0.52
SHMT2-210ENST00000553950 BEND3Q5T5X7 828 aa18.28■□□□□ 0.52
SHMT2-210ENST00000553950 TFCP2L1Q9NZI6 479 aa18.28■□□□□ 0.52
SHMT2-210ENST00000553950 TNNQ9UQP3 1299 aa18.28■□□□□ 0.52
SHMT2-210ENST00000553950 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.27■□□□□ 0.52
SHMT2-210ENST00000553950 CAMTA2O94983 1202 aa18.27■□□□□ 0.52
SHMT2-210ENST00000553950 GNAI3P08754 354 aa18.27■□□□□ 0.52
SHMT2-210ENST00000553950 FKBP8Q14318 412 aa18.27■□□□□ 0.52
SHMT2-210ENST00000553950 CCDC191Q8NCU4 936 aa18.27■□□□□ 0.52
SHMT2-210ENST00000553950 UPF1Q92900 1129 aaKnown RBP eCLIP18.27■□□□□ 0.52
SHMT2-210ENST00000553950 MYD88Q99836 296 aa18.27■□□□□ 0.52
SHMT2-210ENST00000553950 PHF14O94880 888 aa18.26■□□□□ 0.51
SHMT2-210ENST00000553950 IRX6P78412 446 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-210ENST00000553950 TRIM28Q13263 835 aaKnown RBP18.26■□□□□ 0.51
SHMT2-210ENST00000553950 TCIRG1Q13488 830 aa18.26■□□□□ 0.51
SHMT2-210ENST00000553950 PARP10Q53GL7 1025 aa18.26■□□□□ 0.51
SHMT2-210ENST00000553950 DEFB132Q7Z7B7 95 aa18.26■□□□□ 0.51
SHMT2-210ENST00000553950 TBC1D2BQ9UPU7 963 aa18.26■□□□□ 0.51
SHMT2-210ENST00000553950 NEURL1BA8MQ27 555 aa18.25■□□□□ 0.51
SHMT2-210ENST00000553950 ZNF827Q17R98 1081 aa18.25■□□□□ 0.51
SHMT2-210ENST00000553950 CWC25Q9NXE8 425 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-210ENST00000553950 SLC15A2Q16348 729 aa18.24■□□□□ 0.51
SHMT2-210ENST00000553950 ARHGEF1Q92888 912 aaKnown RBP18.24■□□□□ 0.51
SHMT2-210ENST00000553950 ISCA1Q9BUE6 129 aa18.24■□□□□ 0.51
SHMT2-210ENST00000553950 UBTFL1P0CB47 393 aaPredicted RBP18.23■□□□□ 0.51
SHMT2-210ENST00000553950 EXOC6Q8TAG9 804 aa18.23■□□□□ 0.51
SHMT2-210ENST00000553950 C9orf78Q9NZ63 289 aaPredicted RBP18.23■□□□□ 0.51
SHMT2-210ENST00000553950 CARMIL3Q8ND23 1372 aa18.22■□□□□ 0.51
SHMT2-210ENST00000553950 GRM8O00222 908 aa18.22■□□□□ 0.51
SHMT2-210ENST00000553950 IGKV5-2P06315 115 aa18.22■□□□□ 0.51
SHMT2-210ENST00000553950 HSP90B1P14625 803 aaKnown RBP18.22■□□□□ 0.51
SHMT2-210ENST00000553950 GCKRQ14397 625 aa18.22■□□□□ 0.51
SHMT2-210ENST00000553950 UTYO14607 1347 aa18.22■□□□□ 0.51
SHMT2-210ENST00000553950 ZBTB7BO15156 539 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-210ENST00000553950 HLFQ16534 295 aa18.21■□□□□ 0.51
SHMT2-210ENST00000553950 CWF19L2Q2TBE0 894 aaKnown RBP18.21■□□□□ 0.51
SHMT2-210ENST00000553950 USPL1Q5W0Q7 1092 aa18.21■□□□□ 0.51
SHMT2-210ENST00000553950 PPP1R42Q7Z4L9 355 aa18.21■□□□□ 0.51
SHMT2-210ENST00000553950 ANO8Q9HCE9 1232 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-210ENST00000553950 PNPLA7Q6ZV29 1317 aa18.21■□□□□ 0.51
SHMT2-210ENST00000553950 CASZ1Q86V15 1759 aa18.2■□□□□ 0.5
SHMT2-210ENST00000553950 GNAI2P04899 355 aa18.2■□□□□ 0.5
SHMT2-210ENST00000553950 ILDR2Q71H61 639 aa18.2■□□□□ 0.5
SHMT2-210ENST00000553950 ZNF34Q8IZ26 560 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms