RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 GNAI1P63096 354 aa7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 EXOSC9Q06265 439 aaKnown RBP7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 EIF4A2Q14240 407 aaKnown RBP7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 LCE2CQ5TA81 110 aa7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 IFT57Q9NWB7 429 aa7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 SBNO1A3KN83 1393 aa7.71□□□□□ -1.17
VIPAS39-204ENST00000553576 PHRF1Q9P1Y6 1649 aaKnown RBP7.71□□□□□ -1.17
VIPAS39-204ENST00000553576 ADGRL3Q9HAR2 1447 aa7.71□□□□□ -1.17
VIPAS39-204ENST00000553576 RPIAP49247 311 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 ZKSCAN2Q63HK3 967 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 SPRYD3Q8NCJ5 442 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 RBM46Q8TBY0 533 aaKnown RBP7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 PMFBP1Q8TBY8 1022 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 ARHGAP45Q92619 1136 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 CLUAP1Q96AJ1 413 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 CFAP44Q96MT7 982 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 ARHGEF10O15013 1369 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 FLT4P35916 1363 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 KDRP35968 1356 aa7.71□□□□□ -1.18
VIPAS39-204ENST00000553576 LTN1O94822 1766 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 NUTM2FA1L443 756 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 IPO8O15397 1037 aaKnown RBP7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 VAMP4O75379 141 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 SLC10A3P09131 477 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 HMOX1P09601 288 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 SCUBE3Q8IX30 993 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 CYP4X1Q8N118 509 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 TSR2Q969E8 191 aaKnown RBP7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 BACH2Q9BYV9 841 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 ADGRG1Q9Y653 693 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 MAP3K19Q56UN5 1328 aa7.7□□□□□ -1.18
VIPAS39-204ENST00000553576 NCOA3Q9Y6Q9 1424 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 VIRMAQ69YN4 1812 aaKnown RBP7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 RCCD1A6NED2 376 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 HTATSF1O43719 755 aaKnown RBP7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 RLBP1P12271 317 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 MVPQ14764 893 aaKnown RBP7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 HSP90AB2PQ58FF8 381 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 ATF7IPQ6VMQ6 1270 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 DZIP1LQ8IYY4 767 aaKnown RBP7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 PANK1Q8TE04 598 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 SSH1Q8WYL5 1049 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 COG6Q9Y2V7 657 aa7.69□□□□□ -1.18
VIPAS39-204ENST00000553576 LOC100996750A0A140TA64 210 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 CHL1O00533 1208 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 IGHDP01880 384 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 CANXP27824 592 aaKnown RBP7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 SULT6B1Q6IMI4 303 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 FRAT1Q92837 279 aaPredicted RBP7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 SPSB2Q99619 263 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 KRTAP4-6Q9BYQ5 205 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 WDR70Q9NW82 654 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 IGSF1Q8N6C5 1336 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 KIF16BQ96L93 1317 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 RTL1A6NKG5 1358 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 MST1RQ04912 1400 aa7.68□□□□□ -1.18
VIPAS39-204ENST00000553576 TRPM3Q9HCF6 1732 aaPredicted RBP7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 TRIM27P14373 513 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 HAP1P54257 671 aaPredicted RBP7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 PTGDRQ13258 359 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 ABTB2Q8N961 1025 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 CHMP4BQ9H444 224 aaKnown RBP7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 RWDD1Q9H446 243 aaPredicted RBP7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 MBIPQ9NS73 344 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 SMC4Q9NTJ3 1288 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 DDX19BQ9UMR2 479 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 KIAA0232Q92628 1395 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 KIF1AQ12756 1690 aa7.67□□□□□ -1.18
VIPAS39-204ENST00000553576 TERTO14746 1132 aaKnown RBP7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 CD2BP2O95400 341 aaKnown RBP7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 SNRPBP14678 240 aaKnown RBP7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 HOXC9P31274 260 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 AMPHP49418 695 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 AEBP1Q8IUX7 1158 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 IP6K1Q92551 441 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 C19orf44Q9H6X5 657 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 BABAM1Q9NWV8 329 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 NOB1Q9ULX3 412 aaKnown RBP7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 PCDHB15Q9Y5E8 787 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 NFAT5O94916 1531 aa7.66□□□□□ -1.18
VIPAS39-204ENST00000553576 STRCP1A6NGW2 1772 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 CRB1P82279 1406 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 PSME1Q06323 249 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 HDAC1Q13547 482 aaPredicted RBP7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 FAM161AQ3B820 660 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 PUS10Q3MIT2 529 aaKnown RBP7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 PAXIP1Q6ZW49 1069 aaPredicted RBP7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 FTSJ3Q8IY81 847 aaKnown RBP7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 KCNH5Q8NCM2 988 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 GAS2L2Q8NHY3 880 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 BCL2L13Q9BXK5 485 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 ZBTB40Q9NUA8 1239 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 TNNQ9UQP3 1299 aa7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 FCF1Q9Y324 198 aaKnown RBP7.65□□□□□ -1.18
VIPAS39-204ENST00000553576 RGPD2P0DJD1 1756 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 LRRC37A3O60309 1634 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 SLIT3O75094 1523 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 DCCP43146 1447 aa7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 SOS1Q07889 1333 aaPredicted RBP7.64□□□□□ -1.19
VIPAS39-204ENST00000553576 FAM83GA6ND36 823 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms