RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 POLKQ9UBT6 870 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 FHOD1Q9Y613 1164 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 WASLO00401 505 aaPredicted RBP16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 LCMT1Q9UIC8 334 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 KNDC1Q76NI1 1749 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 ERBB3P21860 1342 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 NCKAP5LQ9HCH0 1330 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 CHMLP26374 656 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 PLA2G4DQ86XP0 818 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 ATP6V1DQ9Y5K8 247 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 RAD50Q92878 1312 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 SKILP12757 684 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 ST5P78524 1137 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 FILIP1Q7Z7B0 1213 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 FERMT3Q86UX7 667 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 TNMDQ9H2S6 317 aa16.96■□□□□ 0.31
RAPGEF3-216ENST00000547856 PLA2G4AP47712 749 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 CLCN6P51797 869 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 AK2P54819 239 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 ANAPC15P60006 121 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 LRRC8AQ8IWT6 810 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 DNAJC25Q9H1X3 360 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 ZCCHC17Q9NP64 241 aaKnown RBP16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 GNAI1P63096 354 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 GORABQ5T7V8 394 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 UNC5CLQ8IV45 518 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 CCDC83Q8IWF9 413 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 CPSF1Q10570 1443 aaKnown RBP16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 ATP10DQ9P241 1426 aa16.95■□□□□ 0.3
RAPGEF3-216ENST00000547856 FAM83GA6ND36 823 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 MAP4K4O95819 1239 aaPredicted RBP16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 DCTN1Q14203 1278 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 DACT1Q9NYF0 836 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 LOC102724159A0A0B4J2E5 919 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 LARGE1O95461 756 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 PNMA6AP0CW24 399 aaPredicted RBP16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 GJB2P29033 226 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 PWP2Q15269 919 aaKnown RBP16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 ZRANB1Q9UGI0 708 aa16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 LRRFIP2Q9Y608 721 aaKnown RBP16.94■□□□□ 0.3
RAPGEF3-216ENST00000547856 LRRC7Q96NW7 1537 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 ZNF165P49910 485 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 TEX35Q5T0J7 233 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 NME9Q86XW9 330 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 SMARCE1Q969G3 411 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 CCDC171Q6TFL3 1326 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 HTATSF1O43719 755 aaKnown RBP16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 GTF2A1P52655 376 aaPredicted RBP16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 NYAP1Q6ZVC0 841 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 TTC6Q86TZ1 520 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 CCDC191Q8NCU4 936 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 EFCC1Q9HA90 598 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 USP16Q9Y5T5 823 aa16.93■□□□□ 0.3
RAPGEF3-216ENST00000547856 CDC42BPGQ6DT37 1551 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 MSH6P52701 1360 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 DHX16O60231 1041 aaKnown RBP16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 ARHGAP29Q52LW3 1261 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 SLC4A10Q6U841 1118 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 NUDT16Q96DE0 195 aaKnown RBP16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 TOMM22Q9NS69 142 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 MTMR6Q9Y217 621 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 EMILIN1Q9Y6C2 1016 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 MYO1CO00159 1063 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 FCHSD2O94868 740 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 SLFNL1Q499Z3 407 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 DDX54Q8TDD1 881 aaKnown RBP16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 PTPRCP08575 1304 aa16.92■□□□□ 0.3
RAPGEF3-216ENST00000547856 TNRQ92752 1358 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 GOLGA6L4A6NEF3 574 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 H2AFXP16104 143 aaPredicted RBP16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 NOP2P46087 812 aaKnown RBP16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 NFE2L2Q16236 605 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 TFIP11Q9UBB9 837 aaKnown RBP16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 EDC4Q6P2E9 1401 aaKnown RBP16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 UBR1Q8IWV7 1749 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 SEC31AO94979 1220 aaKnown RBP16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 FAM193AP78312 1265 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 CREBRFQ8IUR6 639 aa16.91■□□□□ 0.3
RAPGEF3-216ENST00000547856 CCDC69A6NI79 296 aa16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 LIMCH1Q9UPQ0 1083 aa16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 TXLNBQ8N3L3 684 aa16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 OSBPL3Q9H4L5 887 aa16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 CPS1P31327 1500 aa16.9■□□□□ 0.3
RAPGEF3-216ENST00000547856 TECPR2O15040 1411 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 FAM135BQ49AJ0 1406 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 TMEM2Q9UHN6 1383 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 RASEFQ8IZ41 740 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 SOX12O15370 315 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 ZSCAN26Q16670 478 aa16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 CCAR2Q8N163 923 aaKnown RBP16.89■□□□□ 0.29
RAPGEF3-216ENST00000547856 A0A087WWV3 80 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 CHRM1P11229 460 aaPredicted RBP16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 HSPA4P34932 840 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 SNX14Q9Y5W7 946 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 CCDC61Q9Y6R9 512 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 MON2Q7Z3U7 1717 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 PRR36Q9H6K5 1346 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms