RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 UBR2Q8IWV8 1755 aa17.3■□□□□ 0.36
SCAF11-208ENST00000546534 PASKQ96RG2 1323 aa17.3■□□□□ 0.36
SCAF11-208ENST00000546534 STYK1Q6J9G0 422 aa17.3■□□□□ 0.36
SCAF11-208ENST00000546534 PRPF40BQ6NWY9 871 aaKnown RBP17.3■□□□□ 0.36
SCAF11-208ENST00000546534 CNKSR1Q969H4 720 aa17.3■□□□□ 0.36
SCAF11-208ENST00000546534 SPDYE2BA6NHP3 402 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 SPDYE6P0CI01 402 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 SRGNP10124 158 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 SPDYE2Q495Y8 402 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 LDHDQ86WU2 507 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 CNBD1Q8NA66 436 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 SETDB2Q96T68 719 aa17.29■□□□□ 0.36
SCAF11-208ENST00000546534 HEG1Q9ULI3 1381 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 IQCA1LA6NCM1 817 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 NPHP1O15259 732 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 CAMTA2O94983 1202 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 A1BGP04217 495 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 IL6STP40189 918 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 CTCFP49711 727 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 VEGFBP49765 207 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 AMER1Q5JTC6 1135 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 ZNF790Q6PG37 636 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 L3MBTL3Q96JM7 780 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 TEX13AQ9BXU3 409 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 TAF1DQ9H5J8 278 aaPredicted RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 SCN7AQ01118 1682 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 VIRMAQ69YN4 1812 aaKnown RBP17.28■□□□□ 0.36
SCAF11-208ENST00000546534 SLX4Q8IY92 1834 aa17.28■□□□□ 0.36
SCAF11-208ENST00000546534 ITGBL1O95965 494 aaPredicted RBP17.27■□□□□ 0.36
SCAF11-208ENST00000546534 SOGA3Q5TF21 947 aa17.27■□□□□ 0.36
SCAF11-208ENST00000546534 IL17REQ8NFR9 667 aa17.27■□□□□ 0.36
SCAF11-208ENST00000546534 AIDAQ96BJ3 306 aa17.27■□□□□ 0.36
SCAF11-208ENST00000546534 MASTLQ96GX5 879 aa17.27■□□□□ 0.36
SCAF11-208ENST00000546534 TMEM88BA6NKF7 163 aa17.26■□□□□ 0.35
SCAF11-208ENST00000546534 DIAPH1O60610 1272 aaKnown RBP17.26■□□□□ 0.35
SCAF11-208ENST00000546534 ST5P78524 1137 aa17.26■□□□□ 0.35
SCAF11-208ENST00000546534 TEFQ10587 303 aa17.26■□□□□ 0.35
SCAF11-208ENST00000546534 C7orf43Q8WVR3 580 aa17.26■□□□□ 0.35
SCAF11-208ENST00000546534 EAPPQ56P03 285 aaPredicted RBP17.25■□□□□ 0.35
SCAF11-208ENST00000546534 WBP1LQ9NX94 342 aa17.25■□□□□ 0.35
SCAF11-208ENST00000546534 LBX1P52954 281 aa17.24■□□□□ 0.35
SCAF11-208ENST00000546534 NPM2Q86SE8 214 aaKnown RBP17.24■□□□□ 0.35
SCAF11-208ENST00000546534 DZIP3Q86Y13 1208 aaKnown RBP17.24■□□□□ 0.35
SCAF11-208ENST00000546534 ZNF541Q9H0D2 1346 aa17.23■□□□□ 0.35
SCAF11-208ENST00000546534 GNAT3A8MTJ3 354 aa17.23■□□□□ 0.35
SCAF11-208ENST00000546534 TRIM26Q12899 539 aaPredicted RBP17.23■□□□□ 0.35
SCAF11-208ENST00000546534 CCDC93Q567U6 631 aa17.23■□□□□ 0.35
SCAF11-208ENST00000546534 FMNL2Q96PY5 1086 aa17.23■□□□□ 0.35
SCAF11-208ENST00000546534 HACL1Q9UJ83 578 aa17.23■□□□□ 0.35
SCAF11-208ENST00000546534 ZNF277Q9NRM2 450 aaPredicted RBP17.22■□□□□ 0.35
SCAF11-208ENST00000546534 CLEC11AQ9Y240 323 aa17.22■□□□□ 0.35
SCAF11-208ENST00000546534 SCN4AP35499 1836 aa17.21■□□□□ 0.35
SCAF11-208ENST00000546534 CACNA1SQ13698 1873 aa17.21■□□□□ 0.35
SCAF11-208ENST00000546534 KCNQ3O43525 872 aa17.21■□□□□ 0.35
SCAF11-208ENST00000546534 EPHX2P34913 555 aa17.21■□□□□ 0.35
SCAF11-208ENST00000546534 PIP4K2AP48426 406 aaPredicted RBP17.21■□□□□ 0.35
SCAF11-208ENST00000546534 FKBP4Q02790 459 aaKnown RBP eCLIP17.21■□□□□ 0.35
SCAF11-208ENST00000546534 OLFM4Q6UX06 510 aa17.21■□□□□ 0.35
SCAF11-208ENST00000546534 NBPF5PQ86XG9 351 aaPredicted RBP17.21■□□□□ 0.35
SCAF11-208ENST00000546534 ARFGEF2Q9Y6D5 1785 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 RASSF10A6NK89 507 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 NPR1P16066 1061 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 GAS2L2Q8NHY3 880 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 USP16Q9Y5T5 823 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 CLSPNQ9HAW4 1339 aa17.2■□□□□ 0.34
SCAF11-208ENST00000546534 KLRG2A4D1S0 409 aaPredicted RBP17.19■□□□□ 0.34
SCAF11-208ENST00000546534 HSPA8P11142 646 aaKnown RBP17.19■□□□□ 0.34
SCAF11-208ENST00000546534 DEFB115Q30KQ5 88 aa17.19■□□□□ 0.34
SCAF11-208ENST00000546534 MAP1SQ66K74 1059 aaPredicted RBP17.19■□□□□ 0.34
SCAF11-208ENST00000546534 CLEC4GQ6UXB4 293 aa17.19■□□□□ 0.34
SCAF11-208ENST00000546534 CNTROBQ8N137 903 aa17.19■□□□□ 0.34
SCAF11-208ENST00000546534 ABHD8Q96I13 439 aa17.19■□□□□ 0.34
SCAF11-208ENST00000546534 RNF123Q5XPI4 1314 aa17.19■□□□□ 0.34
SCAF11-208ENST00000546534 U2SURPO15042 1029 aaKnown RBP17.18■□□□□ 0.34
SCAF11-208ENST00000546534 SLC34A2O95436 690 aa17.18■□□□□ 0.34
SCAF11-208ENST00000546534 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
SCAF11-208ENST00000546534 PNMA8AQ86V59 439 aaPredicted RBP17.18■□□□□ 0.34
SCAF11-208ENST00000546534 RTKN2Q8IZC4 609 aa17.18■□□□□ 0.34
SCAF11-208ENST00000546534 SIPA1L3O60292 1781 aaPredicted RBP17.17■□□□□ 0.34
SCAF11-208ENST00000546534 BCORQ6W2J9 1755 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 ADAMTSL1Q8N6G6 1762 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 CEMIPQ8WUJ3 1361 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 PRAMEF22A3QJZ6 481 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 BTBD11A6QL63 1104 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 FZD9O00144 591 aa17.17■□□□□ 0.34
SCAF11-208ENST00000546534 WDR33Q9C0J8 1336 aaKnown RBP17.17■□□□□ 0.34
SCAF11-208ENST00000546534 PER1O15534 1290 aaPredicted RBP17.16■□□□□ 0.34
SCAF11-208ENST00000546534 TPTE2Q6XPS3 522 aa17.16■□□□□ 0.34
SCAF11-208ENST00000546534 ZNF652Q9Y2D9 606 aa17.16■□□□□ 0.34
SCAF11-208ENST00000546534 SSUH2Q9Y2M2 353 aa17.16■□□□□ 0.34
SCAF11-208ENST00000546534 IARSP41252 1262 aaKnown RBP17.15■□□□□ 0.34
SCAF11-208ENST00000546534 MAP2K1Q02750 393 aaPredicted RBP17.15■□□□□ 0.34
SCAF11-208ENST00000546534 FAM161AQ3B820 660 aa17.15■□□□□ 0.34
SCAF11-208ENST00000546534 SYNE4Q8N205 404 aa17.15■□□□□ 0.34
SCAF11-208ENST00000546534 PCGF6Q9BYE7 350 aa17.15■□□□□ 0.34
SCAF11-208ENST00000546534 ABT1Q9ULW3 272 aaKnown RBP17.15■□□□□ 0.34
SCAF11-208ENST00000546534 NIP7Q9Y221 180 aaKnown RBP eCLIP17.15■□□□□ 0.34
SCAF11-208ENST00000546534 COL3A1P02461 1466 aaPredicted RBP17.15■□□□□ 0.34
SCAF11-208ENST00000546534 FAM177BA6PVY3 158 aa17.14■□□□□ 0.33
SCAF11-208ENST00000546534 GPC2Q8N158 579 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms