RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 IL17REQ8NFR9 667 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 DIP2AQ14689 1571 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 UBR1Q8IWV7 1749 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 MYO3AQ8NEV4 1616 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 VAMP4O75379 141 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 PHF14O94880 888 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 FLIIQ13045 1269 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 SIL1Q9H173 461 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 NEURL4Q96JN8 1562 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 ODF2Q5BJF6 829 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.25□□□□□ -0.771e-9■■■■■ 73.1
CLIP1-218ENST00000545889 CHPF2Q9P2E5 772 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 LRP2BPQ9P2M1 347 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 ERBB3P21860 1342 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 CRACR2BQ8N4Y2 399 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-218ENST00000545889 ZBTB3Q9H5J0 574 aa10.25□□□□□ -0.77
CLIP1-218ENST00000545889 CGNQ9P2M7 1197 aaKnown RBP10.25□□□□□ -0.77
CLIP1-218ENST00000545889 HOOK1Q9UJC3 728 aaKnown RBP10.25□□□□□ -0.77
CLIP1-218ENST00000545889 KCNQ3O43525 872 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 ALDH1L2Q3SY69 923 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 TMEM87AQ8NBN3 555 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 ERC1Q8IUD2 1116 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 JARID2Q92833 1246 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-218ENST00000545889 BLMP54132 1417 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-218ENST00000545889 UQCRHLA0A096LP55 91 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 UQCRHP07919 91 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 STK11IPQ8N1F8 1099 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 DCAF5Q96JK2 942 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 USP21Q9UK80 565 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 IGSF1Q8N6C5 1336 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 PI4KAP2A4QPH2 592 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 CBX1P83916 185 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 PI4KAP1Q8N8J0 262 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 DBF4Q9UBU7 674 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-218ENST00000545889 WWC3Q9ULE0 1092 aa10.24□□□□□ -0.77
CLIP1-218ENST00000545889 FOSBP53539 338 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 GOLGA6L19H0YKK7 550 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 CCT4P50991 539 aaKnown RBP10.23□□□□□ -0.77
CLIP1-218ENST00000545889 FAM182BQ5T319 152 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 ZFYVE27Q5T4F4 411 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 DHX37Q8IY37 1157 aaKnown RBP10.23□□□□□ -0.77
CLIP1-218ENST00000545889 FBXO3Q9UK99 471 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 ARHGEF28Q8N1W1 1705 aaKnown RBP10.23□□□□□ -0.77
CLIP1-218ENST00000545889 ATP5J2-PTCD1G3V325 749 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 KDM4AO75164 1064 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 RLBP1P12271 317 aa10.23□□□□□ -0.77
CLIP1-218ENST00000545889 VPS37CA5D8V6 355 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-218ENST00000545889 GNAI2P04899 355 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 SNRPA1P09661 255 aaKnown RBP10.22□□□□□ -0.77
CLIP1-218ENST00000545889 FKBP4Q02790 459 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLIP1-218ENST00000545889 CNTROBQ8N137 903 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 MYD88Q99836 296 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 OFD1O75665 1012 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 CAVIN4Q5BKX8 364 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 CDK5RAP3Q96JB5 506 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 CHL1O00533 1208 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 G2E3Q7L622 706 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 GRPEL1Q9HAV7 217 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 PCDH11XQ9BZA7 1347 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 PCDH11YQ9BZA8 1340 aa10.22□□□□□ -0.77
CLIP1-218ENST00000545889 TRAK2O60296 914 aa10.21□□□□□ -0.77
CLIP1-218ENST00000545889 KRT18P05783 430 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 GPTP24298 496 aa10.21□□□□□ -0.77
CLIP1-218ENST00000545889 PRIM1P49642 420 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 SOGA3Q5TF21 947 aa10.21□□□□□ -0.77
CLIP1-218ENST00000545889 MTERF4Q7Z6M4 381 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 BICD2Q8TD16 824 aa10.21□□□□□ -0.77
CLIP1-218ENST00000545889 TRMT112Q9UI30 125 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 IFIT1P09914 478 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 PHAXQ9H814 394 aaKnown RBP10.21□□□□□ -0.77
CLIP1-218ENST00000545889 PDZRN3Q9UPQ7 1066 aa10.21□□□□□ -0.77
CLIP1-218ENST00000545889 HSP90AB3PQ58FF7 597 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 ZSCAN25Q6NSZ9 544 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 DNAAF4Q8WXU2 420 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 TFCP2L1Q9NZI6 479 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 COPS6Q7L5N1 327 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 MRPL50Q8N5N7 158 aaKnown RBP10.21□□□□□ -0.78
CLIP1-218ENST00000545889 CERKQ8TCT0 537 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 MAP3K2Q9Y2U5 619 aa10.21□□□□□ -0.78
CLIP1-218ENST00000545889 CDC42BPGQ6DT37 1551 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 METTL24Q5JXM2 366 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 ZNF790Q6PG37 636 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 XAGE3Q8WTP9 111 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 TNS3Q68CZ2 1445 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 PHKG2P15735 406 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 EPS15P42566 896 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 SMC3Q9UQE7 1217 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 WDR17Q8IZU2 1322 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 SRGAP3O43295 1099 aa10.2□□□□□ -0.78
CLIP1-218ENST00000545889 IDH1O75874 414 aaKnown RBP10.2□□□□□ -0.78
CLIP1-218ENST00000545889 INTS3Q68E01 1043 aaKnown RBP10.2□□□□□ -0.78
CLIP1-218ENST00000545889 ZNF496Q96IT1 587 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-218ENST00000545889 CDK12Q9NYV4 1490 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-218ENST00000545889 TDO2P48775 406 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 IPO4Q8TEX9 1081 aaKnown RBP10.19□□□□□ -0.78
CLIP1-218ENST00000545889 EXOC6BQ9Y2D4 811 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 IGSF3O75054 1194 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 PPP4R3BQ5MIZ7 849 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 SPDYE4A6NLX3 237 aa10.19□□□□□ -0.78
CLIP1-218ENST00000545889 PSMA5P28066 241 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms