RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CCDC24Q8N4L8 307 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 UBR2Q8IWV8 1755 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 H0YIN7 160 aa11.3□□□□□ -0.6
USP28-215ENST00000545608 CAMTA2O94983 1202 aa11.3□□□□□ -0.6
USP28-215ENST00000545608 PIP4K2AP48426 406 aaPredicted RBP11.3□□□□□ -0.6
USP28-215ENST00000545608 PRELPP51888 382 aa11.3□□□□□ -0.6
USP28-215ENST00000545608 TTLL6Q8N841 843 aa11.3□□□□□ -0.6
USP28-215ENST00000545608 RTF1Q92541 710 aaKnown RBP11.3□□□□□ -0.6
USP28-215ENST00000545608 TAOK2Q9UL54 1235 aa11.3□□□□□ -0.6
USP28-215ENST00000545608 VIRMAQ69YN4 1812 aaKnown RBP11.3□□□□□ -0.6
USP28-215ENST00000545608 PRR29P0C7W0 189 aa11.29□□□□□ -0.6
USP28-215ENST00000545608 DCAF8Q5TAQ9 597 aa11.29□□□□□ -0.6
USP28-215ENST00000545608 PRR5LQ6MZQ0 368 aa11.29□□□□□ -0.6
USP28-215ENST00000545608 CLEC11AQ9Y240 323 aa11.29□□□□□ -0.6
USP28-215ENST00000545608 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
USP28-215ENST00000545608 ARFGEF1Q9Y6D6 1849 aa11.28□□□□□ -0.6
USP28-215ENST00000545608 SNRPA1P09661 255 aaKnown RBP11.28□□□□□ -0.6
USP28-215ENST00000545608 NUBP1P53384 320 aa11.28□□□□□ -0.6
USP28-215ENST00000545608 DZIP3Q86Y13 1208 aaKnown RBP11.28□□□□□ -0.6
USP28-215ENST00000545608 BRIP1Q9BX63 1249 aa11.28□□□□□ -0.6
USP28-215ENST00000545608 RRAGCQ9HB90 399 aa11.28□□□□□ -0.6
USP28-215ENST00000545608 AFDNP55196 1824 aaKnown RBP11.28□□□□□ -0.6
USP28-215ENST00000545608 SIPA1L3O60292 1781 aaPredicted RBP11.27□□□□□ -0.61
USP28-215ENST00000545608 NFKBIEO00221 500 aa11.27□□□□□ -0.61
USP28-215ENST00000545608 HTATSF1O43719 755 aaKnown RBP11.27□□□□□ -0.61
USP28-215ENST00000545608 NPM2Q86SE8 214 aaKnown RBP11.27□□□□□ -0.61
USP28-215ENST00000545608 HS6ST3Q8IZP7 471 aa11.27□□□□□ -0.61
USP28-215ENST00000545608 RBM46Q8TBY0 533 aaKnown RBP11.27□□□□□ -0.61
USP28-215ENST00000545608 ZNF622Q969S3 477 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP28-215ENST00000545608 SETDB2Q96T68 719 aa11.27□□□□□ -0.61
USP28-215ENST00000545608 MIS18AQ9NYP9 233 aa11.27□□□□□ -0.61
USP28-215ENST00000545608 KDM2BQ8NHM5 1336 aa11.27□□□□□ -0.61
USP28-215ENST00000545608 NBPF26B4DH59 902 aa11.26□□□□□ -0.61
USP28-215ENST00000545608 LMNB1P20700 586 aa11.26□□□□□ -0.61
USP28-215ENST00000545608 PDE6BP35913 854 aa11.26□□□□□ -0.61
USP28-215ENST00000545608 APLP1P51693 650 aa11.26□□□□□ -0.61
USP28-215ENST00000545608 TAF7Q15545 349 aaPredicted RBP11.26□□□□□ -0.61
USP28-215ENST00000545608 NBPF10Q6P3W6 841 aaKnown RBP11.26□□□□□ -0.61
USP28-215ENST00000545608 C16orf71Q8IYS4 520 aaPredicted RBP11.26□□□□□ -0.61
USP28-215ENST00000545608 NBPF15Q8N660 670 aa11.26□□□□□ -0.61
USP28-215ENST00000545608 C21orf2O43822 256 aa11.25□□□□□ -0.61
USP28-215ENST00000545608 DNAJC5GQ8N7S2 189 aa11.25□□□□□ -0.61
USP28-215ENST00000545608 CNBD1Q8NA66 436 aa11.25□□□□□ -0.61
USP28-215ENST00000545608 PDZRN3Q9UPQ7 1066 aa11.25□□□□□ -0.61
USP28-215ENST00000545608 GLTPD2A6NH11 291 aa11.24□□□□□ -0.61
USP28-215ENST00000545608 CLEC4GQ6UXB4 293 aa11.24□□□□□ -0.61
USP28-215ENST00000545608 FAM212AQ96EL1 285 aa11.24□□□□□ -0.61
USP28-215ENST00000545608 PLEKHF1Q96S99 279 aa11.24□□□□□ -0.61
USP28-215ENST00000545608 NPHP1O15259 732 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 SRGNP10124 158 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 ST5P78524 1137 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 HTRA3P83110 453 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 FSTL1Q12841 308 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 STYK1Q6J9G0 422 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 TSHZ2Q9NRE2 1034 aa11.23□□□□□ -0.61
USP28-215ENST00000545608 ZC3H4Q9UPT8 1303 aaKnown RBP11.23□□□□□ -0.61
USP28-215ENST00000545608 SBF1O95248 1867 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 SCN7AQ01118 1682 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 HLFQ16534 295 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 NBPF5PQ86XG9 351 aaPredicted RBP11.22□□□□□ -0.61
USP28-215ENST00000545608 CNKSR1Q969H4 720 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 MASTLQ96GX5 879 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
USP28-215ENST00000545608 NIP7Q9Y221 180 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP28-215ENST00000545608 ZNF652Q9Y2D9 606 aa11.22□□□□□ -0.61
USP28-215ENST00000545608 ANKRD31Q8N7Z5 1873 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 FAM177BA6PVY3 158 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 POTECB2RU33 542 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 RIOK3O14730 519 aaKnown RBP11.21□□□□□ -0.61
USP28-215ENST00000545608 NEFMP07197 916 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 VEGFAP15692 232 aaPredicted RBP11.21□□□□□ -0.61
USP28-215ENST00000545608 EIF4A1P60842 406 aaKnown RBP11.21□□□□□ -0.61
USP28-215ENST00000545608 NFE2L2Q16236 605 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 PRPF40BQ6NWY9 871 aaKnown RBP11.21□□□□□ -0.61
USP28-215ENST00000545608 NGEFQ8N5V2 710 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 PNISRQ8TF01 805 aaKnown RBP11.21□□□□□ -0.61
USP28-215ENST00000545608 CREBZFQ9NS37 354 aa11.21□□□□□ -0.61
USP28-215ENST00000545608 DLEC1Q9Y238 1755 aa11.21□□□□□ -0.62
USP28-215ENST00000545608 KLRG2A4D1S0 409 aaPredicted RBP11.2□□□□□ -0.62
USP28-215ENST00000545608 ERFEQ4G0M1 354 aa11.2□□□□□ -0.62
USP28-215ENST00000545608 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
USP28-215ENST00000545608 TPTE2Q6XPS3 522 aa11.2□□□□□ -0.62
USP28-215ENST00000545608 REM2Q8IYK8 340 aaPredicted RBP11.2□□□□□ -0.62
USP28-215ENST00000545608 SMC1BQ8NDV3 1235 aa11.2□□□□□ -0.62
USP28-215ENST00000545608 C7orf43Q8WVR3 580 aa11.2□□□□□ -0.62
USP28-215ENST00000545608 LTBP3Q9NS15 1303 aa11.19□□□□□ -0.62
USP28-215ENST00000545608 NPR1P16066 1061 aa11.19□□□□□ -0.62
USP28-215ENST00000545608 DPY19L2Q6NUT2 758 aa11.19□□□□□ -0.62
USP28-215ENST00000545608 TTLL7Q6ZT98 887 aa11.19□□□□□ -0.62
USP28-215ENST00000545608 RNF25Q96BH1 459 aaPredicted RBP11.19□□□□□ -0.62
USP28-215ENST00000545608 TAOK3Q9H2K8 898 aa11.19□□□□□ -0.62
USP28-215ENST00000545608 RRP7AQ9Y3A4 280 aaKnown RBP11.19□□□□□ -0.62
USP28-215ENST00000545608 COL11A2P13942 1736 aaPredicted RBP11.18□□□□□ -0.62
USP28-215ENST00000545608 KLRG1Q96E93 195 aa11.18□□□□□ -0.62
USP28-215ENST00000545608 PNNQ9H307 717 aaKnown RBP11.18□□□□□ -0.62
USP28-215ENST00000545608 BCORQ6W2J9 1755 aa11.18□□□□□ -0.62
USP28-215ENST00000545608 MAPK8IP3Q9UPT6 1336 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 SLX4Q8IY92 1834 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 ERVV-1B6SEH8 477 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 DDNO94850 711 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms