RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 GLRX3O76003 335 aaKnown RBP21.9■■□□□ 1.1
VIM-209ENST00000544301 MRE11P49959 708 aa21.9■■□□□ 1.1
VIM-209ENST00000544301 CHRNA2Q15822 529 aa21.9■■□□□ 1.1
VIM-209ENST00000544301 ERC1Q8IUD2 1116 aa21.9■■□□□ 1.1
VIM-209ENST00000544301 IGKV5-2P06315 115 aa21.89■■□□□ 1.1
VIM-209ENST00000544301 ZDHHC9Q9Y397 364 aa21.89■■□□□ 1.1
VIM-209ENST00000544301 CUL4AQ13619 759 aa21.89■■□□□ 1.09
VIM-209ENST00000544301 RIC3Q7Z5B4 369 aa21.89■■□□□ 1.09
VIM-209ENST00000544301 BICC1Q9H694 974 aaKnown RBP21.89■■□□□ 1.09
VIM-209ENST00000544301 PLEKHG2Q9H7P9 1386 aa21.89■■□□□ 1.09
VIM-209ENST00000544301 MYL6BP14649 208 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 MCTP1Q6DN14 999 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 LARP1Q6PKG0 1096 aaKnown RBP21.88■■□□□ 1.09
VIM-209ENST00000544301 ZNF496Q96IT1 587 aaPredicted RBP21.88■■□□□ 1.09
VIM-209ENST00000544301 SPATA31A3Q5VYP0 1347 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 RAD50Q92878 1312 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 CYP27B1O15528 508 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 DCAF5Q96JK2 942 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 PANK2Q9BZ23 570 aa21.88■■□□□ 1.09
VIM-209ENST00000544301 MRC1P22897 1456 aa21.87■■□□□ 1.09
VIM-209ENST00000544301 KLHL40Q2TBA0 621 aa21.87■■□□□ 1.09
VIM-209ENST00000544301 XAGE3Q8WTP9 111 aa21.87■■□□□ 1.09
VIM-209ENST00000544301 GRPEL1Q9HAV7 217 aa21.87■■□□□ 1.09
VIM-209ENST00000544301 ECHDC1Q9NTX5 307 aa21.87■■□□□ 1.09
VIM-209ENST00000544301 LSG1Q9H089 658 aaKnown RBP21.86■■□□□ 1.09
VIM-209ENST00000544301 UPF3BQ9BZI7 483 aaKnown RBP21.86■■□□□ 1.09
VIM-209ENST00000544301 NEURL1BA8MQ27 555 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 IFIT2P09913 472 aaKnown RBP21.85■■□□□ 1.09
VIM-209ENST00000544301 COPS6Q7L5N1 327 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 GAS2L3Q86XJ1 694 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 GPATCH3Q96I76 525 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 DDX49Q9Y6V7 483 aaKnown RBP21.85■■□□□ 1.09
VIM-209ENST00000544301 PKD1L3Q7Z443 1732 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 CPDO75976 1380 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 NEXNQ0ZGT2 675 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 INTS4Q96HW7 963 aaKnown RBP21.85■■□□□ 1.09
VIM-209ENST00000544301 LMBRD1Q9NUN5 540 aa21.85■■□□□ 1.09
VIM-209ENST00000544301 SNRPA1P09661 255 aaKnown RBP21.84■■□□□ 1.09
VIM-209ENST00000544301 CWC27Q6UX04 472 aaKnown RBP21.84■■□□□ 1.09
VIM-209ENST00000544301 LRP10Q7Z4F1 713 aa21.84■■□□□ 1.09
VIM-209ENST00000544301 TTC5Q8N0Z6 440 aa21.84■■□□□ 1.09
VIM-209ENST00000544301 METTL22Q9BUU2 404 aaPredicted RBP21.84■■□□□ 1.09
VIM-209ENST00000544301 USP16Q9Y5T5 823 aa21.84■■□□□ 1.09
VIM-209ENST00000544301 SASH1O94885 1247 aa21.83■■□□□ 1.09
VIM-209ENST00000544301 NOL8Q76FK4 1167 aaKnown RBP21.83■■□□□ 1.09
VIM-209ENST00000544301 AACSQ86V21 672 aa21.83■■□□□ 1.09
VIM-209ENST00000544301 G3BP1Q13283 466 aaKnown RBP eCLIP21.83■■□□□ 1.08
VIM-209ENST00000544301 GCKRQ14397 625 aa21.83■■□□□ 1.08
VIM-209ENST00000544301 FAM43AQ8N2R8 423 aa21.83■■□□□ 1.08
VIM-209ENST00000544301 MYD88Q99836 296 aa21.83■■□□□ 1.08
VIM-209ENST00000544301 SNX14Q9Y5W7 946 aa21.83■■□□□ 1.08
VIM-209ENST00000544301 KIAA1211Q6ZU35 1233 aa21.82■■□□□ 1.08
VIM-209ENST00000544301 DIAPH3Q9NSV4 1193 aa21.82■■□□□ 1.08
VIM-209ENST00000544301 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.82■■□□□ 1.08
VIM-209ENST00000544301 FMNL2Q96PY5 1086 aa21.82■■□□□ 1.08
VIM-209ENST00000544301 ANKRD13DQ6ZTN6 518 aa21.81■■□□□ 1.08
VIM-209ENST00000544301 RUFY2Q8WXA3 655 aa21.8■■□□□ 1.08
VIM-209ENST00000544301 EAF2Q96CJ1 260 aaPredicted RBP21.8■■□□□ 1.08
VIM-209ENST00000544301 CABP4P57796 275 aa21.8■■□□□ 1.08
VIM-209ENST00000544301 EVI5LQ96CN4 794 aa21.8■■□□□ 1.08
VIM-209ENST00000544301 BRD1O95696 1058 aa21.79■■□□□ 1.08
VIM-209ENST00000544301 PIP4K2AP48426 406 aaPredicted RBP21.79■■□□□ 1.08
VIM-209ENST00000544301 EPHA10Q5JZY3 1008 aa21.79■■□□□ 1.08
VIM-209ENST00000544301 RASEFQ8IZ41 740 aa21.79■■□□□ 1.08
VIM-209ENST00000544301 HSPA2P54652 639 aa21.79■■□□□ 1.08
VIM-209ENST00000544301 CCDC8Q9H0W5 538 aaPredicted RBP21.78■■□□□ 1.08
VIM-209ENST00000544301 SIL1Q9H173 461 aa21.78■■□□□ 1.08
VIM-209ENST00000544301 PRPF40AO75400 957 aaKnown RBP21.77■■□□□ 1.08
VIM-209ENST00000544301 BRINP3Q76B58 766 aa21.77■■□□□ 1.08
VIM-209ENST00000544301 TTC14Q96N46 770 aa21.77■■□□□ 1.08
VIM-209ENST00000544301 FOXD4L5Q5VV16 416 aaPredicted RBP21.77■■□□□ 1.08
VIM-209ENST00000544301 KLHDC4Q8TBB5 520 aa21.77■■□□□ 1.08
VIM-209ENST00000544301 FOXD4L4Q8WXT5 416 aaPredicted RBP21.77■■□□□ 1.08
VIM-209ENST00000544301 XIRP1Q702N8 1843 aaKnown RBP21.77■■□□□ 1.08
VIM-209ENST00000544301 PTH1RQ03431 593 aa21.76■■□□□ 1.07
VIM-209ENST00000544301 CHAMP1Q96JM3 812 aa21.76■■□□□ 1.07
VIM-209ENST00000544301 TLR7Q9NYK1 1049 aaKnown RBP21.76■■□□□ 1.07
VIM-209ENST00000544301 GLI3P10071 1580 aa21.76■■□□□ 1.07
VIM-209ENST00000544301 PARP4Q9UKK3 1724 aaKnown RBP21.76■■□□□ 1.07
VIM-209ENST00000544301 NCLP19338 710 aaKnown RBP21.75■■□□□ 1.07
VIM-209ENST00000544301 CAVIN1Q6NZI2 390 aaKnown RBP21.74■■□□□ 1.07
VIM-209ENST00000544301 GPT2Q8TD30 523 aa21.74■■□□□ 1.07
VIM-209ENST00000544301 JARID2Q92833 1246 aaPredicted RBP21.74■■□□□ 1.07
VIM-209ENST00000544301 AK2P54819 239 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 ZNF445P59923 1031 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 KCNB2Q92953 911 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 COPRSQ9NQ92 184 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 WDR17Q8IZU2 1322 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 LAMB4A4D0S4 1761 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 ARFGEF2Q9Y6D5 1785 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 HIP1O00291 1037 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 COL15A1P39059 1388 aa21.73■■□□□ 1.07
VIM-209ENST00000544301 RFX5P48382 616 aaPredicted RBP21.73■■□□□ 1.07
VIM-209ENST00000544301 AFDNP55196 1824 aaKnown RBP21.73■■□□□ 1.07
VIM-209ENST00000544301 RUFY3Q7L099 469 aa21.72■■□□□ 1.07
VIM-209ENST00000544301 PRDM11Q9NQV5 511 aa21.72■■□□□ 1.07
VIM-209ENST00000544301 ZSCAN23Q3MJ62 389 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 RABL6Q3YEC7 729 aaPredicted RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 UBE3BQ7Z3V4 1068 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 PLBD2Q8NHP8 589 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms