RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 MYD88Q99836 296 aa9.24□□□□□ -0.93
VPS53-205ENST00000541903 CCDC87Q9NVE4 849 aa9.24□□□□□ -0.93
VPS53-205ENST00000541903 C9orf78Q9NZ63 289 aaPredicted RBP9.24□□□□□ -0.93
VPS53-205ENST00000541903 IL6STP40189 918 aaPredicted RBP9.23□□□□□ -0.93
VPS53-205ENST00000541903 CRKLP46109 303 aaKnown RBP9.23□□□□□ -0.93
VPS53-205ENST00000541903 ITPK1Q13572 414 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 CWF19L2Q2TBE0 894 aaKnown RBP9.23□□□□□ -0.93
VPS53-205ENST00000541903 TTLL7Q6ZT98 887 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 GCC1Q96CN9 775 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 BCL11BQ9C0K0 894 aaPredicted RBP9.23□□□□□ -0.93
VPS53-205ENST00000541903 USP44Q9H0E7 712 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 ZBTB3Q9H5J0 574 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 ZBTB1Q9Y2K1 713 aa9.23□□□□□ -0.93
VPS53-205ENST00000541903 LRRFIP2Q9Y608 721 aaKnown RBP9.23□□□□□ -0.93
VPS53-205ENST00000541903 NEURL1BA8MQ27 555 aa9.22□□□□□ -0.93
VPS53-205ENST00000541903 GRM8O00222 908 aa9.22□□□□□ -0.93
VPS53-205ENST00000541903 PTF1AQ7RTS3 328 aa9.22□□□□□ -0.93
VPS53-205ENST00000541903 SMC5Q8IY18 1101 aa9.22□□□□□ -0.93
VPS53-205ENST00000541903 ARXQ96QS3 562 aa9.22□□□□□ -0.93
VPS53-205ENST00000541903 CCNL1Q9UK58 526 aaPredicted RBP9.22□□□□□ -0.93
VPS53-205ENST00000541903 ZNF831Q5JPB2 1677 aa9.21□□□□□ -0.93
VPS53-205ENST00000541903 IGKV5-2P06315 115 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 NBPF7P0C2Y1 421 aaPredicted RBP9.21□□□□□ -0.94
VPS53-205ENST00000541903 GCKRQ14397 625 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 HSP90AB3PQ58FF7 597 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 INTS5Q6P9B9 1019 aaKnown RBP9.21□□□□□ -0.94
VPS53-205ENST00000541903 DZIP3Q86Y13 1208 aaKnown RBP9.21□□□□□ -0.94
VPS53-205ENST00000541903 SIRT2Q8IXJ6 389 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 ZBTB47Q9UFB7 747 aaPredicted RBP9.21□□□□□ -0.94
VPS53-205ENST00000541903 PDZRN3Q9UPQ7 1066 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 UTYO14607 1347 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 MAP3K15Q6ZN16 1313 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 CNTNAP4Q9C0A0 1308 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 BTAF1O14981 1849 aa9.21□□□□□ -0.94
VPS53-205ENST00000541903 ARFGEF2Q9Y6D5 1785 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 A0A087WZG4 1122 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 ATP5J2-PTCD1G3V325 749 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 RGS3P49796 1198 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 ATP8B2P98198 1209 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 LINC00116Q8NCU8 138 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 CWC25Q9NXE8 425 aaPredicted RBP9.2□□□□□ -0.94
VPS53-205ENST00000541903 RREB1Q92766 1687 aa9.2□□□□□ -0.94
VPS53-205ENST00000541903 NUP188Q5SRE5 1749 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 KAT6BQ8WYB5 2073 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 ERVV-1B6SEH8 477 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 TRIM37O94972 964 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 EIF5P55010 431 aaKnown RBP9.19□□□□□ -0.94
VPS53-205ENST00000541903 TCIRG1Q13488 830 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 GIGYF2Q6Y7W6 1299 aaKnown RBP9.19□□□□□ -0.94
VPS53-205ENST00000541903 CCDC191Q8NCU4 936 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 DCTPP1Q9H773 170 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 COL15A1P39059 1388 aa9.19□□□□□ -0.94
VPS53-205ENST00000541903 SRGAP3O43295 1099 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 HMGB2P26583 209 aaKnown RBP9.18□□□□□ -0.94
VPS53-205ENST00000541903 NUCB1Q02818 461 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 SLC27A3Q5K4L6 730 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 RC3H1Q5TC82 1133 aaKnown RBP9.18□□□□□ -0.94
VPS53-205ENST00000541903 ANKRD45Q5TZF3 282 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 UBE3BQ7Z3V4 1068 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 PPP1R42Q7Z4L9 355 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 CHD1LQ86WJ1 897 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 SKAP1Q86WV1 359 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 SUCLG2Q96I99 432 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 ISCA1Q9BUE6 129 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 RGS17Q9UGC6 210 aaPredicted RBP9.18□□□□□ -0.94
VPS53-205ENST00000541903 TBC1D2BQ9UPU7 963 aa9.18□□□□□ -0.94
VPS53-205ENST00000541903 BRWD3Q6RI45 1802 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 COL5A3P25940 1745 aaPredicted RBP9.17□□□□□ -0.94
VPS53-205ENST00000541903 PNMA6EA0A0J9YXQ4 647 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 GNPATO15228 680 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 KCNQ4P56696 695 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 TRIM28Q13263 835 aaKnown RBP9.17□□□□□ -0.94
VPS53-205ENST00000541903 MTX1Q13505 466 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 POLA2Q14181 598 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 POTEAQ6S8J7 498 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 SSH3Q8TE77 659 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 AK7Q96M32 723 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 ZNF652Q9Y2D9 606 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 SBF2Q86WG5 1849 aa9.17□□□□□ -0.94
VPS53-205ENST00000541903 H7C1W4 665 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 RGL2O15211 777 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 RPS6KA4O75676 772 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 CAMTA2O94983 1202 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 GPTP24298 496 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 HLFQ16534 295 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 HSP90AB4PQ58FF6 505 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 LNPKQ9C0E8 428 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 BICC1Q9H694 974 aaKnown RBP9.16□□□□□ -0.94
VPS53-205ENST00000541903 RTCBQ9Y3I0 505 aaKnown RBP9.16□□□□□ -0.94
VPS53-205ENST00000541903 LY75O60449 1722 aa9.16□□□□□ -0.94
VPS53-205ENST00000541903 APBB1O00213 710 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 RAB11FIP3O75154 756 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 SURF6O75683 361 aaKnown RBP9.15□□□□□ -0.94
VPS53-205ENST00000541903 PCCAP05165 728 aaPredicted RBP9.15□□□□□ -0.94
VPS53-205ENST00000541903 CASP7P55210 303 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 OS9Q13438 667 aaPredicted RBP9.15□□□□□ -0.94
VPS53-205ENST00000541903 PARP10Q53GL7 1025 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 NLRP10Q86W26 655 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 ZBTB38Q8NAP3 1195 aaPredicted RBP9.15□□□□□ -0.94
VPS53-205ENST00000541903 JARID2Q92833 1246 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms