RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LTBP4Q8N2S1 1624 aa17.87■□□□□ 0.45
CLIP1-216ENST00000541410 GCKRQ14397 625 aa17.87■□□□□ 0.45
CLIP1-216ENST00000541410 EPHA10Q5JZY3 1008 aa17.87■□□□□ 0.45
CLIP1-216ENST00000541410 SYTL4Q96C24 671 aaPredicted RBP17.87■□□□□ 0.45
CLIP1-216ENST00000541410 SIL1Q9H173 461 aa17.87■□□□□ 0.45
CLIP1-216ENST00000541410 AFDNP55196 1824 aaKnown RBP17.86■□□□□ 0.45
CLIP1-216ENST00000541410 PIGBQ92521 554 aa17.86■□□□□ 0.45
CLIP1-216ENST00000541410 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.86■□□□□ 0.45
CLIP1-216ENST00000541410 COL16A1Q07092 1604 aaPredicted RBP17.86■□□□□ 0.45
CLIP1-216ENST00000541410 A0A0G2JS52 829 aa17.86■□□□□ 0.45
CLIP1-216ENST00000541410 UBE3BQ7Z3V4 1068 aa17.86■□□□□ 0.45
CLIP1-216ENST00000541410 KIF1BPQ96EK5 621 aa17.86■□□□□ 0.45
CLIP1-216ENST00000541410 KCPQ6ZWJ8 1503 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 LAMB4A4D0S4 1761 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 RAB11FIP3O75154 756 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 ZBTB3Q9H5J0 574 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 UBR2Q8IWV8 1755 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 ARFGEF2Q9Y6D5 1785 aa17.85■□□□□ 0.45
CLIP1-216ENST00000541410 CD2BP2O95400 341 aaKnown RBP17.84■□□□□ 0.45
CLIP1-216ENST00000541410 COL14A1Q05707 1796 aaKnown RBP17.84■□□□□ 0.45
CLIP1-216ENST00000541410 MTX1Q13505 466 aa17.84■□□□□ 0.45
CLIP1-216ENST00000541410 TUBGCP6Q96RT7 1819 aa17.84■□□□□ 0.45
CLIP1-216ENST00000541410 AHDC1Q5TGY3 1603 aaPredicted RBP17.83■□□□□ 0.45
CLIP1-216ENST00000541410 NFKBIBQ15653 356 aa17.83■□□□□ 0.45
CLIP1-216ENST00000541410 CASC1Q6TDU7 716 aa17.83■□□□□ 0.45
CLIP1-216ENST00000541410 ARXQ96QS3 562 aa17.83■□□□□ 0.45
CLIP1-216ENST00000541410 USP26Q9BXU7 913 aa17.83■□□□□ 0.44
CLIP1-216ENST00000541410 PHLPP1O60346 1717 aa17.83■□□□□ 0.44
CLIP1-216ENST00000541410 UTYO14607 1347 aa17.83■□□□□ 0.44
CLIP1-216ENST00000541410 A0A087WZG4 1122 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 HSCBQ8IWL3 235 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 PLBD2Q8NHP8 589 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 STAP2Q9UGK3 403 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 ITGB4P16144 1822 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 DNAJC10Q8IXB1 793 aa17.82■□□□□ 0.44
CLIP1-216ENST00000541410 EXOC5O00471 708 aa17.81■□□□□ 0.44
CLIP1-216ENST00000541410 PI4K2BQ8TCG2 481 aa17.81■□□□□ 0.44
CLIP1-216ENST00000541410 ATG3Q9NT62 314 aa17.81■□□□□ 0.44
CLIP1-216ENST00000541410 PAPPAQ13219 1627 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 FRAT2O75474 233 aaPredicted RBP17.8■□□□□ 0.44
CLIP1-216ENST00000541410 FOXD4L1Q9NU39 408 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 CCDC9Q9Y3X0 531 aaKnown RBP17.8■□□□□ 0.44
CLIP1-216ENST00000541410 AK9Q5TCS8 1911 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 ERC2O15083 957 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 SASH1O94885 1247 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 HSP90AB4PQ58FF6 505 aa17.8■□□□□ 0.44
CLIP1-216ENST00000541410 CLASRPQ8N2M8 674 aaKnown RBP17.79■□□□□ 0.44
CLIP1-216ENST00000541410 IL25Q9H293 177 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 ANTXR1Q9H6X2 564 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 HDAC5Q9UQL6 1122 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 COL22A1Q8NFW1 1626 aaPredicted RBP17.79■□□□□ 0.44
CLIP1-216ENST00000541410 DISP2A7MBM2 1401 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 TNS2Q63HR2 1409 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 CHMLP26374 656 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 G3BP1Q13283 466 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLIP1-216ENST00000541410 AACSQ86V21 672 aa17.79■□□□□ 0.44
CLIP1-216ENST00000541410 CCDC8Q9H0W5 538 aaPredicted RBP17.79■□□□□ 0.44
CLIP1-216ENST00000541410 CHMP3Q9Y3E7 222 aa17.78■□□□□ 0.44
CLIP1-216ENST00000541410 PLCH1Q4KWH8 1693 aa17.78■□□□□ 0.44
CLIP1-216ENST00000541410 PRIM1P49642 420 aaKnown RBP17.77■□□□□ 0.44
CLIP1-216ENST00000541410 ACSBG1Q96GR2 724 aa17.77■□□□□ 0.44
CLIP1-216ENST00000541410 ESYT1Q9BSJ8 1104 aa17.77■□□□□ 0.44
CLIP1-216ENST00000541410 TLR7Q9NYK1 1049 aaKnown RBP17.77■□□□□ 0.44
CLIP1-216ENST00000541410 REC8O95072 547 aa17.76■□□□□ 0.43
CLIP1-216ENST00000541410 IFIT2P09913 472 aaKnown RBP17.76■□□□□ 0.43
CLIP1-216ENST00000541410 EAF2Q96CJ1 260 aaPredicted RBP17.76■□□□□ 0.43
CLIP1-216ENST00000541410 SLC4A9Q96Q91 983 aa17.76■□□□□ 0.43
CLIP1-216ENST00000541410 ERBB4Q15303 1308 aa17.76■□□□□ 0.43
CLIP1-216ENST00000541410 ANO2Q9NQ90 1003 aa17.75■□□□□ 0.43
CLIP1-216ENST00000541410 LMBR1LQ6UX01 489 aa17.75■□□□□ 0.43
CLIP1-216ENST00000541410 NUP188Q5SRE5 1749 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 TOM1O60784 492 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 CASP7P55210 303 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 SNX21Q969T3 373 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 SPATA31A1Q5TZJ5 1347 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 ERC1Q8IUD2 1116 aa17.74■□□□□ 0.43
CLIP1-216ENST00000541410 CWC25Q9NXE8 425 aaPredicted RBP17.74■□□□□ 0.43
CLIP1-216ENST00000541410 AOX1Q06278 1338 aa17.73■□□□□ 0.43
CLIP1-216ENST00000541410 UBAP1LF5GYI3 381 aa17.73■□□□□ 0.43
CLIP1-216ENST00000541410 DDB1Q16531 1140 aa17.73■□□□□ 0.43
CLIP1-216ENST00000541410 BCL9O00512 1426 aa17.73■□□□□ 0.43
CLIP1-216ENST00000541410 RFX5P48382 616 aaPredicted RBP17.73■□□□□ 0.43
CLIP1-216ENST00000541410 PTPN12Q05209 780 aaKnown RBP17.73■□□□□ 0.43
CLIP1-216ENST00000541410 CCDC85AQ96PX6 553 aaPredicted RBP17.72■□□□□ 0.43
CLIP1-216ENST00000541410 ECHDC1Q9NTX5 307 aa17.72■□□□□ 0.43
CLIP1-216ENST00000541410 HSP90AA1P07900 732 aaKnown RBP17.72■□□□□ 0.43
CLIP1-216ENST00000541410 CWC27Q6UX04 472 aaKnown RBP17.72■□□□□ 0.43
CLIP1-216ENST00000541410 PALD1Q9ULE6 856 aa17.72■□□□□ 0.43
CLIP1-216ENST00000541410 H7C1W4 665 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 STARD3NLO95772 234 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 FOXO4P98177 505 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 TFCP2Q12800 502 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 CNTROBQ8N137 903 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 WNK3Q9BYP7 1800 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 DOT1LQ8TEK3 1739 aa17.71■□□□□ 0.43
CLIP1-216ENST00000541410 GLRX3O76003 335 aaKnown RBP17.71■□□□□ 0.42
CLIP1-216ENST00000541410 RABL6Q3YEC7 729 aaPredicted RBP17.71■□□□□ 0.42
CLIP1-216ENST00000541410 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.7■□□□□ 0.42
CLIP1-216ENST00000541410 K7ELQ4 463 aaPredicted RBP17.7■□□□□ 0.42
CLIP1-216ENST00000541410 GPTP24298 496 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms