RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 SOX11P35716 441 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 SCNN1DP51172 638 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 NBPF1Q3BBV0 1214 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 SLCO4C1Q6ZQN7 724 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 BTBD6Q96KE9 485 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 POLR3GLQ9BT43 218 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 NDFIP2Q9NV92 336 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 SERTAD1Q9UHV2 236 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 GJA3Q9Y6H8 435 aa7.96□□□□□ -1.14
PRKDC-209ENST00000540819 KRBA1A5PL33 1030 aa7.95□□□□□ -1.14
PRKDC-209ENST00000540819 ARAFP10398 606 aa7.95□□□□□ -1.14
PRKDC-209ENST00000540819 NCLP19338 710 aaKnown RBP7.95□□□□□ -1.14
PRKDC-209ENST00000540819 GRIN2CQ14957 1233 aa7.95□□□□□ -1.14
PRKDC-209ENST00000540819 A0A1W2PNR3 127 aa7.94□□□□□ -1.14
PRKDC-209ENST00000540819 NEURL1BA8MQ27 555 aa7.94□□□□□ -1.14
PRKDC-209ENST00000540819 SMARCA5O60264 1052 aaPredicted RBP7.94□□□□□ -1.14
PRKDC-209ENST00000540819 PROCP04070 461 aa7.94□□□□□ -1.14
PRKDC-209ENST00000540819 BCL2L13Q9BXK5 485 aa7.94□□□□□ -1.14
PRKDC-209ENST00000540819 CABP1Q9NZU7 370 aa7.94□□□□□ -1.14
PRKDC-209ENST00000540819 CDK2AP1O14519 115 aa7.93□□□□□ -1.14
PRKDC-209ENST00000540819 GNB5O14775 395 aa7.93□□□□□ -1.14
PRKDC-209ENST00000540819 EPXP11678 715 aa7.93□□□□□ -1.14
PRKDC-209ENST00000540819 LINC00114Q6XXX2 140 aa7.93□□□□□ -1.14
PRKDC-209ENST00000540819 ALG2Q9H553 416 aa7.93□□□□□ -1.14
PRKDC-209ENST00000540819 A6NJY4 79 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 K7ELQ4 463 aaPredicted RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 BACH1O14867 736 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 KHNYNO15037 678 aaKnown RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 MAPTP10636 758 aaKnown RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 COL8A1P27658 744 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 ZC3H6P61129 1189 aaKnown RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 BICDL1Q6ZP65 573 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 UBXN4Q92575 508 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 SLC4A9Q96Q91 983 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 NOP53Q9NZM5 478 aaKnown RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 TFIP11Q9UBB9 837 aaKnown RBP7.92□□□□□ -1.14
PRKDC-209ENST00000540819 PRR12Q9ULL5 1215 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 CADPSQ9ULU8 1353 aa7.92□□□□□ -1.14
PRKDC-209ENST00000540819 DCDC2BA2VCK2 349 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 ATP4AP20648 1035 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 VAMP1P23763 118 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 ADH6P28332 368 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 BAG6P46379 1132 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 TNP2Q05952 138 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 EML3Q32P44 896 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 ANKRD13AQ8IZ07 590 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 SUV39H2Q9H5I1 410 aa7.91□□□□□ -1.14
PRKDC-209ENST00000540819 DNAAF2Q9NVR5 837 aaKnown RBP7.91□□□□□ -1.14
PRKDC-209ENST00000540819 ELOAQ14241 798 aaKnown RBP7.9□□□□□ -1.14
PRKDC-209ENST00000540819 FAM182BQ5T319 152 aa7.9□□□□□ -1.14
PRKDC-209ENST00000540819 UCN2Q96RP3 112 aa7.9□□□□□ -1.14
PRKDC-209ENST00000540819 ZDHHC3Q9NYG2 299 aa7.9□□□□□ -1.14
PRKDC-209ENST00000540819 NOD1Q9Y239 953 aa7.9□□□□□ -1.14
PRKDC-209ENST00000540819 TMEM229AB2RXF0 380 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 LZTS3O60299 673 aaPredicted RBP7.89□□□□□ -1.15
PRKDC-209ENST00000540819 SKIP12755 728 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 CD33P20138 364 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 PSME1Q06323 249 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 MTFR1Q15390 333 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 SF3A1Q15459 793 aaKnown RBP7.89□□□□□ -1.15
PRKDC-209ENST00000540819 CDCA8Q53HL2 280 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 GIPC2Q8TF65 315 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 ZIC5Q96T25 663 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 NEUROD4Q9HD90 331 aa7.89□□□□□ -1.15
PRKDC-209ENST00000540819 AVENQ9NQS1 362 aaPredicted RBP7.89□□□□□ -1.15
PRKDC-209ENST00000540819 MAFBQ9Y5Q3 323 aaPredicted RBP7.89□□□□□ -1.15
PRKDC-209ENST00000540819 ARID4AP29374 1257 aaPredicted RBP7.88□□□□□ -1.15
PRKDC-209ENST00000540819 CHSY3Q70JA7 882 aa7.88□□□□□ -1.15
PRKDC-209ENST00000540819 CWC22Q9HCG8 908 aaKnown RBP7.88□□□□□ -1.15
PRKDC-209ENST00000540819 PCDHGA11Q9Y5H2 935 aa7.88□□□□□ -1.15
PRKDC-209ENST00000540819 C1QTNF9BB2RNN3 333 aa7.87□□□□□ -1.15
PRKDC-209ENST00000540819 FURINP09958 794 aa7.87□□□□□ -1.15
PRKDC-209ENST00000540819 HOXB4P17483 251 aaPredicted RBP7.87□□□□□ -1.15
PRKDC-209ENST00000540819 BRD2P25440 801 aaKnown RBP7.87□□□□□ -1.15
PRKDC-209ENST00000540819 ZNF326Q5BKZ1 582 aaKnown RBP7.87□□□□□ -1.15
PRKDC-209ENST00000540819 MARK1Q9P0L2 795 aa7.87□□□□□ -1.15
PRKDC-209ENST00000540819 IQSEC3Q9UPP2 1182 aaPredicted RBP7.87□□□□□ -1.15
PRKDC-209ENST00000540819 PARP3Q9Y6F1 533 aa7.87□□□□□ -1.15
PRKDC-209ENST00000540819 FAM157BP0CG42 384 aa7.86□□□□□ -1.15
PRKDC-209ENST00000540819 ALAS2P22557 587 aa7.86□□□□□ -1.15
PRKDC-209ENST00000540819 DGKGP49619 791 aa7.86□□□□□ -1.15
PRKDC-209ENST00000540819 PCBP4P57723 403 aaKnown RBP7.86□□□□□ -1.15
PRKDC-209ENST00000540819 NOM1Q5C9Z4 860 aaKnown RBP7.86□□□□□ -1.15
PRKDC-209ENST00000540819 PIK3CDO00329 1044 aa7.85□□□□□ -1.15
PRKDC-209ENST00000540819 GTF2IP78347 998 aa7.85□□□□□ -1.15
PRKDC-209ENST00000540819 LAMC2Q13753 1193 aa7.85□□□□□ -1.15
PRKDC-209ENST00000540819 PHLDB3Q6NSJ2 640 aa7.85□□□□□ -1.15
PRKDC-209ENST00000540819 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.85□□□□□ -1.15
PRKDC-209ENST00000540819 SOWAHDA6NJG2 315 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 SAMD5Q5TGI4 173 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 ZNF468Q5VIY5 522 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-209ENST00000540819 FCHSD1Q86WN1 690 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 DHX37Q8IY37 1157 aaKnown RBP7.84□□□□□ -1.15
PRKDC-209ENST00000540819 ZNF295-AS1Q8N0V1 137 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 L3MBTL2Q969R5 705 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 SCHIP1Q9P0W5 487 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-209ENST00000540819 KLF15Q9UIH9 416 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 ZNF232Q9UNY5 417 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 USP3Q9Y6I4 520 aa7.84□□□□□ -1.15
PRKDC-209ENST00000540819 NOS2P35228 1153 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms