RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ZKSCAN1P17029 563 aaPredicted RBP15.21■□□□□ 0.03
SFSWAP-209ENST00000540469 TIGD1Q96MW7 591 aa15.21■□□□□ 0.03
SFSWAP-209ENST00000540469 ZNF215Q9UL58 517 aaPredicted RBP15.21■□□□□ 0.02
SFSWAP-209ENST00000540469 FLIIQ13045 1269 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 SYCP1Q15431 976 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 CACTINQ8WUQ7 758 aaKnown RBP15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 ZSCAN31Q96LW9 406 aaPredicted RBP15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 CPSF1Q10570 1443 aaKnown RBP15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 RUFY2Q8WXA3 655 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 SLFN14P0C7P3 912 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 CEBPAP49715 358 aaPredicted RBP15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 TERF2Q15554 542 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 FBXW7Q969H0 707 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 SH2B1Q9NRF2 756 aaPredicted RBP15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 STAP2Q9UGK3 403 aa15.2■□□□□ 0.02
SFSWAP-209ENST00000540469 ELF2Q15723 593 aa15.19■□□□□ 0.02
SFSWAP-209ENST00000540469 TTC14Q96N46 770 aa15.19■□□□□ 0.02
SFSWAP-209ENST00000540469 ABCA9Q8IUA7 1624 aa15.19■□□□□ 0.02
SFSWAP-209ENST00000540469 SALL3Q9BXA9 1300 aa15.19■□□□□ 0.02
SFSWAP-209ENST00000540469 PDCP20941 246 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 EIF4A2Q14240 407 aaKnown RBP15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 DDX19AQ9NUU7 478 aaKnown RBP15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 KIAA0232Q92628 1395 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 STK3Q13188 491 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 CDC37L1Q7L3B6 337 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 SKILP12757 684 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 SCAND2PQ9GZW5 306 aaPredicted RBP15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 SLC52A1Q9NWF4 448 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 HYPKQ9NX55 129 aa15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 MORC2Q9Y6X9 1032 aaPredicted RBP15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 MAP2P11137 1827 aaKnown RBP15.18■□□□□ 0.02
SFSWAP-209ENST00000540469 SRGAP3O43295 1099 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 FOXO3O43524 673 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 CEBPZQ03701 1054 aaKnown RBP15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 ZFP91Q96JP5 570 aaPredicted RBP15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 TCEANC2Q96MN5 208 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 LSG1Q9H089 658 aaKnown RBP15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 HTATSF1O43719 755 aaKnown RBP15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 KMT5BQ4FZB7 885 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 CCDC30Q5VVM6 783 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 CALCOCO1Q9P1Z2 691 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 CCDC171Q6TFL3 1326 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 NCKAP5LQ9HCH0 1330 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 CDC42BPGQ6DT37 1551 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 RAB11FIP3O75154 756 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 RHPN1Q8TCX5 695 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 PPP6R1Q9UPN7 881 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 LMTK2Q8IWU2 1503 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 ARAP3Q8WWN8 1544 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 POGZQ7Z3K3 1410 aa15.17■□□□□ 0.02
SFSWAP-209ENST00000540469 ANKRD26Q9UPS8 1709 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 ADCK5Q3MIX3 580 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 PPP1R42Q7Z4L9 355 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 SOS1Q07889 1333 aaPredicted RBP15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 ME3Q16798 604 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 ARID5BQ14865 1188 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 CCDC144BQ3MJ40 725 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 VPS53Q5VIR6 699 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 CCDC144CPQ8IYA2 1237 aa15.16■□□□□ 0.02
SFSWAP-209ENST00000540469 NUTM2FA1L443 756 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 EPB41L2O43491 1005 aaKnown RBP15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 NPHP3Q7Z494 1330 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 PTPRMP28827 1452 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 CDK12Q9NYV4 1490 aaPredicted RBP15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 H3BQV1 296 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 IRX5P78411 483 aaPredicted RBP15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 IFFO2Q5TF58 517 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 FBXO38Q6PIJ6 1188 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 KIF1BPQ96EK5 621 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 NOL10Q9BSC4 688 aaKnown RBP15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 ST7Q9NRC1 585 aa15.15■□□□□ 0.02
SFSWAP-209ENST00000540469 USP27XA6NNY8 438 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 TAF7LQ5H9L4 462 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 GORABQ5T7V8 394 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 GTF3C6Q969F1 213 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 AOX1Q06278 1338 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 ZRSR1Q15695 479 aaKnown RBP15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 ERO1AQ96HE7 468 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 NEXMIFQ5QGS0 1516 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 NR1I2O75469 434 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 SLU7O95391 586 aaKnown RBP15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 FOSBP53539 338 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 HSP90AB2PQ58FF8 381 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 PLA2G4DQ86XP0 818 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 CLSTN2Q9H4D0 955 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 USP16Q9Y5T5 823 aa15.14■□□□□ 0.01
SFSWAP-209ENST00000540469 CCDC69A6NI79 296 aa15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 PTH1RQ03431 593 aa15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 LRRC8AQ8IWT6 810 aa15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 TDRD7Q8NHU6 1098 aaKnown RBP15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 KIF20BQ96Q89 1820 aa15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 NUDT16Q96DE0 195 aaKnown RBP15.13■□□□□ 0.01
SFSWAP-209ENST00000540469 NEMFO60524 1076 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 GPATCH3Q96I76 525 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 DLG5Q8TDM6 1919 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 EDC4Q6P2E9 1401 aaKnown RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 NRDCO43847 1150 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 GLRX3O76003 335 aaKnown RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 HSP90B1P14625 803 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms