RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 ZNF772Q68DY9 489 aaPredicted RBP25.48■■□□□ 1.67
TNFRSF1A-205ENST00000534885 SMARCC1Q92922 1105 aaPredicted RBP25.48■■□□□ 1.67
TNFRSF1A-205ENST00000534885 MYD88Q99836 296 aa25.48■■□□□ 1.67
TNFRSF1A-205ENST00000534885 LRRFIP2Q9Y608 721 aaKnown RBP25.48■■□□□ 1.67
TNFRSF1A-205ENST00000534885 FBXO41Q8TF61 875 aa25.47■■□□□ 1.67
TNFRSF1A-205ENST00000534885 NEXNQ0ZGT2 675 aa25.46■■□□□ 1.67
TNFRSF1A-205ENST00000534885 ZBTB1Q9Y2K1 713 aa25.46■■□□□ 1.67
TNFRSF1A-205ENST00000534885 CICQ96RK0 1608 aaPredicted RBP25.46■■□□□ 1.67
TNFRSF1A-205ENST00000534885 RGS3P49796 1198 aa25.46■■□□□ 1.67
TNFRSF1A-205ENST00000534885 ITPK1Q13572 414 aa25.46■■□□□ 1.67
TNFRSF1A-205ENST00000534885 AFDNP55196 1824 aaKnown RBP25.45■■□□□ 1.66
TNFRSF1A-205ENST00000534885 NEURL1BA8MQ27 555 aa25.44■■□□□ 1.66
TNFRSF1A-205ENST00000534885 ZBTB3Q9H5J0 574 aa25.44■■□□□ 1.66
TNFRSF1A-205ENST00000534885 C9orf78Q9NZ63 289 aaPredicted RBP25.44■■□□□ 1.66
TNFRSF1A-205ENST00000534885 MYH14Q7Z406 1995 aaKnown RBP25.42■■□□□ 1.66
TNFRSF1A-205ENST00000534885 RBM6P78332 1123 aaKnown RBP25.42■■□□□ 1.66
TNFRSF1A-205ENST00000534885 ZNF831Q5JPB2 1677 aa25.42■■□□□ 1.66
TNFRSF1A-205ENST00000534885 COL5A3P25940 1745 aaPredicted RBP25.42■■□□□ 1.66
TNFRSF1A-205ENST00000534885 ATP5J2-PTCD1G3V325 749 aa25.41■■□□□ 1.66
TNFRSF1A-205ENST00000534885 GRM8O00222 908 aa25.41■■□□□ 1.66
TNFRSF1A-205ENST00000534885 GCC1Q96CN9 775 aa25.41■■□□□ 1.66
TNFRSF1A-205ENST00000534885 PNMA6EA0A0J9YXQ4 647 aa25.41■■□□□ 1.66
TNFRSF1A-205ENST00000534885 CRKLP46109 303 aaKnown RBP25.41■■□□□ 1.66
TNFRSF1A-205ENST00000534885 GCKRQ14397 625 aa25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 INTS5Q6P9B9 1019 aaKnown RBP25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 KRT27Q7Z3Y8 459 aa25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 DCTPP1Q9H773 170 aa25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 KCNQ4P56696 695 aa25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 UTYO14607 1347 aa25.4■■□□□ 1.66
TNFRSF1A-205ENST00000534885 RREB1Q92766 1687 aa25.39■■□□□ 1.66
TNFRSF1A-205ENST00000534885 NUCB1Q02818 461 aa25.39■■□□□ 1.65
TNFRSF1A-205ENST00000534885 CCDC87Q9NVE4 849 aa25.39■■□□□ 1.65
TNFRSF1A-205ENST00000534885 IBTKQ9P2D0 1353 aaPredicted RBP25.39■■□□□ 1.65
TNFRSF1A-205ENST00000534885 HMMRO75330 724 aa25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 ATP8B2P98198 1209 aa25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 ARXQ96QS3 562 aa25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 TSHZ2Q9NRE2 1034 aa25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 IL6STP40189 918 aaPredicted RBP25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 KIF6Q6ZMV9 814 aa25.38■■□□□ 1.65
TNFRSF1A-205ENST00000534885 ANKRD45Q5TZF3 282 aa25.36■■□□□ 1.65
TNFRSF1A-205ENST00000534885 LNPKQ9C0E8 428 aa25.36■■□□□ 1.65
TNFRSF1A-205ENST00000534885 MAP3K15Q6ZN16 1313 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 PDE4AP27815 886 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 CHD1LQ86WJ1 897 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 LINC00116Q8NCU8 138 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 SUCLG2Q96I99 432 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 LY75O60449 1722 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 EIF5P55010 431 aaKnown RBP25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 PPP1R42Q7Z4L9 355 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 KAZALD1Q96I82 304 aa25.35■■□□□ 1.65
TNFRSF1A-205ENST00000534885 FAM196AQ6ZSG2 479 aa25.34■■□□□ 1.65
TNFRSF1A-205ENST00000534885 JARID2Q92833 1246 aaPredicted RBP25.34■■□□□ 1.65
TNFRSF1A-205ENST00000534885 BCL11BQ9C0K0 894 aaPredicted RBP25.34■■□□□ 1.65
TNFRSF1A-205ENST00000534885 RGS17Q9UGC6 210 aaPredicted RBP25.33■■□□□ 1.65
TNFRSF1A-205ENST00000534885 HLFQ16534 295 aa25.33■■□□□ 1.65
TNFRSF1A-205ENST00000534885 TBC1D2BQ9UPU7 963 aa25.33■■□□□ 1.65
TNFRSF1A-205ENST00000534885 A0A087WZG4 1122 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 UBE3BQ7Z3V4 1068 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 DZIP3Q86Y13 1208 aaKnown RBP25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 SSH3Q8TE77 659 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 SRGAP3O43295 1099 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 RXRBP28702 533 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 TCIRG1Q13488 830 aa25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 NPM2Q86SE8 214 aaKnown RBP25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 BICC1Q9H694 974 aaKnown RBP25.32■■□□□ 1.64
TNFRSF1A-205ENST00000534885 GIGYF2Q6Y7W6 1299 aaKnown RBP25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 ISCA1Q9BUE6 129 aa25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 CWC25Q9NXE8 425 aaPredicted RBP25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 HDAC5Q9UQL6 1122 aa25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 EXOC6BQ9Y2D4 811 aa25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 NUP98P52948 1817 aa25.31■■□□□ 1.64
TNFRSF1A-205ENST00000534885 APBB1O00213 710 aa25.3■■□□□ 1.64
TNFRSF1A-205ENST00000534885 POLA2Q14181 598 aa25.3■■□□□ 1.64
TNFRSF1A-205ENST00000534885 CCNL1Q9UK58 526 aaPredicted RBP25.3■■□□□ 1.64
TNFRSF1A-205ENST00000534885 MTX1Q13505 466 aa25.3■■□□□ 1.64
TNFRSF1A-205ENST00000534885 CCDC191Q8NCU4 936 aa25.3■■□□□ 1.64
TNFRSF1A-205ENST00000534885 CASP7P55210 303 aa25.29■■□□□ 1.64
TNFRSF1A-205ENST00000534885 ANKRD36CQ5JPF3 1778 aa25.29■■□□□ 1.64
TNFRSF1A-205ENST00000534885 TAF1LQ8IZX4 1826 aa25.29■■□□□ 1.64
TNFRSF1A-205ENST00000534885 TRIM37O94972 964 aa25.28■■□□□ 1.64
TNFRSF1A-205ENST00000534885 RTL5Q5HYW3 569 aaPredicted RBP25.28■■□□□ 1.64
TNFRSF1A-205ENST00000534885 EPHA10Q5JZY3 1008 aa25.28■■□□□ 1.64
TNFRSF1A-205ENST00000534885 CNTNAP4Q9C0A0 1308 aa25.27■■□□□ 1.64
TNFRSF1A-205ENST00000534885 ERVV-1B6SEH8 477 aa25.27■■□□□ 1.64
TNFRSF1A-205ENST00000534885 H7C1W4 665 aa25.27■■□□□ 1.64
TNFRSF1A-205ENST00000534885 POTEAQ6S8J7 498 aa25.27■■□□□ 1.64
TNFRSF1A-205ENST00000534885 COL15A1P39059 1388 aa25.26■■□□□ 1.63
TNFRSF1A-205ENST00000534885 SMARCA5O60264 1052 aaPredicted RBP25.26■■□□□ 1.63
TNFRSF1A-205ENST00000534885 TRIM28Q13263 835 aaKnown RBP25.26■■□□□ 1.63
TNFRSF1A-205ENST00000534885 BCL11AQ9H165 835 aa25.26■■□□□ 1.63
TNFRSF1A-205ENST00000534885 GPTP24298 496 aa25.25■■□□□ 1.63
TNFRSF1A-205ENST00000534885 HSP90AB3PQ58FF7 597 aa25.24■■□□□ 1.63
TNFRSF1A-205ENST00000534885 SURF6O75683 361 aaKnown RBP25.23■■□□□ 1.63
TNFRSF1A-205ENST00000534885 CAMTA2O94983 1202 aa25.23■■□□□ 1.63
TNFRSF1A-205ENST00000534885 SMIM5Q71RC9 77 aa25.23■■□□□ 1.63
TNFRSF1A-205ENST00000534885 RC3H1Q5TC82 1133 aaKnown RBP25.22■■□□□ 1.63
TNFRSF1A-205ENST00000534885 NLRP10Q86W26 655 aa25.22■■□□□ 1.63
TNFRSF1A-205ENST00000534885 C16orf71Q8IYS4 520 aaPredicted RBP25.22■■□□□ 1.63
TNFRSF1A-205ENST00000534885 LRRC4BQ9NT99 713 aa25.22■■□□□ 1.63
TNFRSF1A-205ENST00000534885 ZBTB47Q9UFB7 747 aaPredicted RBP25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms