RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 C21orf2O43822 256 aa21.05■□□□□ 0.96
CHMP4A-207ENST00000533523 A1BGP04217 495 aa21.05■□□□□ 0.96
CHMP4A-207ENST00000533523 BRIP1Q9BX63 1249 aa21.05■□□□□ 0.96
CHMP4A-207ENST00000533523 BTBD11A6QL63 1104 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 CFAP53Q96M91 514 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 PDZRN3Q9UPQ7 1066 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 CNTNAP1P78357 1384 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 LAMB4A4D0S4 1761 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 PASKQ96RG2 1323 aa21.04■□□□□ 0.96
CHMP4A-207ENST00000533523 KCNQ3O43525 872 aa21.03■□□□□ 0.96
CHMP4A-207ENST00000533523 CAMTA2O94983 1202 aa21.03■□□□□ 0.96
CHMP4A-207ENST00000533523 ST5P78524 1137 aa21.03■□□□□ 0.96
CHMP4A-207ENST00000533523 SETDB2Q96T68 719 aa21.03■□□□□ 0.96
CHMP4A-207ENST00000533523 CREBZFQ9NS37 354 aa21.03■□□□□ 0.96
CHMP4A-207ENST00000533523 PIP4K2AP48426 406 aaPredicted RBP21.02■□□□□ 0.96
CHMP4A-207ENST00000533523 DZIP3Q86Y13 1208 aaKnown RBP21.02■□□□□ 0.96
CHMP4A-207ENST00000533523 PHACTR3Q96KR7 559 aa21.02■□□□□ 0.96
CHMP4A-207ENST00000533523 RSPH6AQ9H0K4 717 aa21.02■□□□□ 0.96
CHMP4A-207ENST00000533523 DLG5Q8TDM6 1919 aa21.02■□□□□ 0.95
CHMP4A-207ENST00000533523 SCN4AP35499 1836 aa21.01■□□□□ 0.95
CHMP4A-207ENST00000533523 ERFEQ4G0M1 354 aa21.01■□□□□ 0.95
CHMP4A-207ENST00000533523 DPY19L2Q6NUT2 758 aa21■□□□□ 0.95
CHMP4A-207ENST00000533523 TAOK3Q9H2K8 898 aa21■□□□□ 0.95
CHMP4A-207ENST00000533523 THSD7BQ9C0I4 1608 aa21■□□□□ 0.95
CHMP4A-207ENST00000533523 DDNO94850 711 aaPredicted RBP20.99■□□□□ 0.95
CHMP4A-207ENST00000533523 CHADLQ6NUI6 762 aa20.99■□□□□ 0.95
CHMP4A-207ENST00000533523 PRPF40BQ6NWY9 871 aaKnown RBP20.99■□□□□ 0.95
CHMP4A-207ENST00000533523 STYK1Q6J9G0 422 aa20.98■□□□□ 0.95
CHMP4A-207ENST00000533523 RTF1Q92541 710 aaKnown RBP20.98■□□□□ 0.95
CHMP4A-207ENST00000533523 CNKSR1Q969H4 720 aa20.98■□□□□ 0.95
CHMP4A-207ENST00000533523 NUDCQ9Y266 331 aa20.98■□□□□ 0.95
CHMP4A-207ENST00000533523 LTBP3Q9NS15 1303 aa20.98■□□□□ 0.95
CHMP4A-207ENST00000533523 PRAMEF22A3QJZ6 481 aa20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 U2AF1L5P0DN76 240 aaPredicted RBP20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 U2AF1Q01081 240 aaKnown RBP eCLIP20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 MCM10Q7L590 875 aa20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 NBPF5PQ86XG9 351 aaPredicted RBP20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 USP16Q9Y5T5 823 aa20.97■□□□□ 0.95
CHMP4A-207ENST00000533523 LTBP1Q14766 1721 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 SRGNP10124 158 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 VEGFBP49765 207 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 MASTLQ96GX5 879 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 PRDM10Q9NQV6 1147 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 ZNF652Q9Y2D9 606 aa20.96■□□□□ 0.95
CHMP4A-207ENST00000533523 KDM3BQ7LBC6 1761 aa20.95■□□□□ 0.94
CHMP4A-207ENST00000533523 SOGA3Q5TF21 947 aa20.95■□□□□ 0.94
CHMP4A-207ENST00000533523 NUP98P52948 1817 aa20.94■□□□□ 0.94
CHMP4A-207ENST00000533523 ITGBL1O95965 494 aaPredicted RBP20.94■□□□□ 0.94
CHMP4A-207ENST00000533523 SNRPA1P09661 255 aaKnown RBP20.94■□□□□ 0.94
CHMP4A-207ENST00000533523 COL4A5P29400 1685 aa20.93■□□□□ 0.94
CHMP4A-207ENST00000533523 DCTN1Q14203 1278 aa20.92■□□□□ 0.94
CHMP4A-207ENST00000533523 CLEC4GQ6UXB4 293 aa20.92■□□□□ 0.94
CHMP4A-207ENST00000533523 WBP1LQ9NX94 342 aa20.92■□□□□ 0.94
CHMP4A-207ENST00000533523 ZNF541Q9H0D2 1346 aa20.92■□□□□ 0.94
CHMP4A-207ENST00000533523 FAM177BA6PVY3 158 aa20.91■□□□□ 0.94
CHMP4A-207ENST00000533523 PPP2R1AP30153 589 aa20.91■□□□□ 0.94
CHMP4A-207ENST00000533523 LBX1P52954 281 aa20.91■□□□□ 0.94
CHMP4A-207ENST00000533523 CCDC93Q567U6 631 aa20.91■□□□□ 0.94
CHMP4A-207ENST00000533523 NIP7Q9Y221 180 aaKnown RBP eCLIP20.91■□□□□ 0.94
CHMP4A-207ENST00000533523 HSPA8P11142 646 aaKnown RBP20.9■□□□□ 0.94
CHMP4A-207ENST00000533523 FAM161AQ3B820 660 aa20.9■□□□□ 0.94
CHMP4A-207ENST00000533523 TAF1DQ9H5J8 278 aaPredicted RBP20.9■□□□□ 0.94
CHMP4A-207ENST00000533523 SNED1Q8TER0 1413 aa20.89■□□□□ 0.94
CHMP4A-207ENST00000533523 NPR1P16066 1061 aa20.89■□□□□ 0.93
CHMP4A-207ENST00000533523 OLFM4Q6UX06 510 aa20.89■□□□□ 0.93
CHMP4A-207ENST00000533523 L3MBTL3Q96JM7 780 aaPredicted RBP20.89■□□□□ 0.93
CHMP4A-207ENST00000533523 NBPF26B4DH59 902 aa20.88■□□□□ 0.93
CHMP4A-207ENST00000533523 NBPF10Q6P3W6 841 aaKnown RBP20.88■□□□□ 0.93
CHMP4A-207ENST00000533523 NBPF15Q8N660 670 aa20.88■□□□□ 0.93
CHMP4A-207ENST00000533523 C7orf43Q8WVR3 580 aa20.88■□□□□ 0.93
CHMP4A-207ENST00000533523 CTCFP49711 727 aaPredicted RBP20.87■□□□□ 0.93
CHMP4A-207ENST00000533523 ABHD8Q96I13 439 aa20.87■□□□□ 0.93
CHMP4A-207ENST00000533523 ZNF277Q9NRM2 450 aaPredicted RBP20.87■□□□□ 0.93
CHMP4A-207ENST00000533523 IQCA1LA6NCM1 817 aa20.86■□□□□ 0.93
CHMP4A-207ENST00000533523 FKBP4Q02790 459 aaKnown RBP eCLIP20.86■□□□□ 0.93
CHMP4A-207ENST00000533523 TPTE2Q6XPS3 522 aa20.86■□□□□ 0.93
CHMP4A-207ENST00000533523 LDHDQ86WU2 507 aa20.86■□□□□ 0.93
CHMP4A-207ENST00000533523 HTATSF1O43719 755 aaKnown RBP20.85■□□□□ 0.93
CHMP4A-207ENST00000533523 FMR1Q06787 632 aaKnown RBP eCLIP20.85■□□□□ 0.93
CHMP4A-207ENST00000533523 SLC51AQ86UW1 340 aa20.85■□□□□ 0.93
CHMP4A-207ENST00000533523 MIS18AQ9NYP9 233 aa20.85■□□□□ 0.93
CHMP4A-207ENST00000533523 ABCC12Q96J65 1359 aa20.85■□□□□ 0.93
CHMP4A-207ENST00000533523 GTF2E1P29083 439 aaPredicted RBP20.84■□□□□ 0.93
CHMP4A-207ENST00000533523 TAF7Q15545 349 aaPredicted RBP20.84■□□□□ 0.93
CHMP4A-207ENST00000533523 HLFQ16534 295 aa20.84■□□□□ 0.93
CHMP4A-207ENST00000533523 RASSF10A6NK89 507 aa20.83■□□□□ 0.93
CHMP4A-207ENST00000533523 TMEM88BA6NKF7 163 aa20.83■□□□□ 0.93
CHMP4A-207ENST00000533523 RGL2O15211 777 aa20.83■□□□□ 0.93
CHMP4A-207ENST00000533523 NEFMP07197 916 aa20.83■□□□□ 0.93
CHMP4A-207ENST00000533523 NGEFQ8N5V2 710 aa20.83■□□□□ 0.93
CHMP4A-207ENST00000533523 TRPM7Q96QT4 1865 aa20.82■□□□□ 0.92
CHMP4A-207ENST00000533523 KLRG2A4D1S0 409 aaPredicted RBP20.82■□□□□ 0.92
CHMP4A-207ENST00000533523 EAPPQ56P03 285 aaPredicted RBP20.82■□□□□ 0.92
CHMP4A-207ENST00000533523 RTKN2Q8IZC4 609 aa20.82■□□□□ 0.92
CHMP4A-207ENST00000533523 NUTM1Q86Y26 1132 aa20.8■□□□□ 0.92
CHMP4A-207ENST00000533523 ALDH1B1P30837 517 aa20.79■□□□□ 0.92
CHMP4A-207ENST00000533523 IARSP41252 1262 aaKnown RBP20.79■□□□□ 0.92
CHMP4A-207ENST00000533523 MAP1SQ66K74 1059 aaPredicted RBP20.79■□□□□ 0.92
CHMP4A-207ENST00000533523 KIF6Q6ZMV9 814 aa20.79■□□□□ 0.92
CHMP4A-207ENST00000533523 NYXQ9GZU5 481 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms