RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 PCGF6Q9BYE7 350 aa12.2□□□□□ -0.46
USF1-210ENST00000531842 COL4A5P29400 1685 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 LTBP3Q9NS15 1303 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 NPHP1O15259 732 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 STARD3NLO95772 234 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 EIF4G2P78344 907 aaKnown RBP eCLIP12.19□□□□□ -0.46
USF1-210ENST00000531842 MAP1SQ66K74 1059 aaPredicted RBP12.19□□□□□ -0.46
USF1-210ENST00000531842 C7orf43Q8WVR3 580 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 CLEC11AQ9Y240 323 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 KNSTRNQ9Y448 316 aa12.19□□□□□ -0.46
USF1-210ENST00000531842 RNF123Q5XPI4 1314 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 FAM161AQ3B820 660 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 CC2D1BQ5T0F9 858 aaKnown RBP12.18□□□□□ -0.46
USF1-210ENST00000531842 ZNF790Q6PG37 636 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 LDHDQ86WU2 507 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 SETDB2Q96T68 719 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 USP16Q9Y5T5 823 aa12.18□□□□□ -0.46
USF1-210ENST00000531842 COL3A1P02461 1466 aaPredicted RBP12.18□□□□□ -0.46
USF1-210ENST00000531842 A0A087WZG4 1122 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 TMEM88BA6NKF7 163 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 HSPA8P11142 646 aaKnown RBP12.17□□□□□ -0.46
USF1-210ENST00000531842 CTCFP49711 727 aaPredicted RBP12.17□□□□□ -0.46
USF1-210ENST00000531842 STYK1Q6J9G0 422 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 DZIP3Q86Y13 1208 aaKnown RBP12.17□□□□□ -0.46
USF1-210ENST00000531842 MASTLQ96GX5 879 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 PRDM10Q9NQV6 1147 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 WBP1LQ9NX94 342 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 TSKSQ9UJT2 592 aa12.17□□□□□ -0.46
USF1-210ENST00000531842 CASP8AP2Q9UKL3 1982 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 U2SURPO15042 1029 aaKnown RBP12.16□□□□□ -0.46
USF1-210ENST00000531842 DIAPH1O60610 1272 aaKnown RBP12.16□□□□□ -0.46
USF1-210ENST00000531842 IL6STP40189 918 aaPredicted RBP12.16□□□□□ -0.46
USF1-210ENST00000531842 TEFQ10587 303 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 GRM1Q13255 1194 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 CNKSR1Q969H4 720 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 AIDAQ96BJ3 306 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 ABHD8Q96I13 439 aa12.16□□□□□ -0.46
USF1-210ENST00000531842 L3MBTL3Q96JM7 780 aaPredicted RBP12.16□□□□□ -0.46
USF1-210ENST00000531842 TRPM7Q96QT4 1865 aa12.15□□□□□ -0.46
USF1-210ENST00000531842 EPHX2P34913 555 aa12.15□□□□□ -0.46
USF1-210ENST00000531842 ST5P78524 1137 aa12.15□□□□□ -0.46
USF1-210ENST00000531842 NBPF5PQ86XG9 351 aaPredicted RBP12.15□□□□□ -0.46
USF1-210ENST00000531842 PHACTR3Q96KR7 559 aa12.15□□□□□ -0.46
USF1-210ENST00000531842 NUP98P52948 1817 aa12.14□□□□□ -0.47
USF1-210ENST00000531842 IQCA1LA6NCM1 817 aa12.14□□□□□ -0.47
USF1-210ENST00000531842 FKBP4Q02790 459 aaKnown RBP eCLIP12.14□□□□□ -0.47
USF1-210ENST00000531842 CCDC93Q567U6 631 aa12.14□□□□□ -0.47
USF1-210ENST00000531842 CNTROBQ8N137 903 aa12.14□□□□□ -0.47
USF1-210ENST00000531842 HACL1Q9UJ83 578 aa12.14□□□□□ -0.47
USF1-210ENST00000531842 WDR33Q9C0J8 1336 aaKnown RBP12.13□□□□□ -0.47
USF1-210ENST00000531842 TNRC18O15417 2968 aaPredicted RBP12.13□□□□□ -0.47
USF1-210ENST00000531842 GNAT3A8MTJ3 354 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 NBPF26B4DH59 902 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 TRAF5O00463 557 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 HLFQ16534 295 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 DEFB115Q30KQ5 88 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 NBPF10Q6P3W6 841 aaKnown RBP12.13□□□□□ -0.47
USF1-210ENST00000531842 SYNE4Q8N205 404 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 NBPF15Q8N660 670 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 FMNL2Q96PY5 1086 aa12.13□□□□□ -0.47
USF1-210ENST00000531842 ABT1Q9ULW3 272 aaKnown RBP12.13□□□□□ -0.47
USF1-210ENST00000531842 KIF7Q2M1P5 1343 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 THSD7BQ9C0I4 1608 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 RASSF10A6NK89 507 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 BTBD11A6QL63 1104 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 TCERG1O14776 1098 aaKnown RBP12.12□□□□□ -0.47
USF1-210ENST00000531842 SLC34A2O95436 690 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 CYP4F22Q6NT55 531 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 PAXIP1Q6ZW49 1069 aaPredicted RBP12.12□□□□□ -0.47
USF1-210ENST00000531842 PDZRN3Q9UPQ7 1066 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 GJA3Q9Y6H8 435 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 ABCC12Q96J65 1359 aa12.12□□□□□ -0.47
USF1-210ENST00000531842 SNED1Q8TER0 1413 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 CCDC85CA6NKD9 419 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 AOC2O75106 756 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 NPR1P16066 1061 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 IARSP41252 1262 aaKnown RBP12.11□□□□□ -0.47
USF1-210ENST00000531842 EPS15P42566 896 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 DCTN1Q14203 1278 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 MCM10Q7L590 875 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 NUTM1Q86Y26 1132 aa12.11□□□□□ -0.47
USF1-210ENST00000531842 NIP7Q9Y221 180 aaKnown RBP eCLIP12.11□□□□□ -0.47
USF1-210ENST00000531842 TAF1P21675 1872 aa12.1□□□□□ -0.47
USF1-210ENST00000531842 CEMIPQ8WUJ3 1361 aa12.1□□□□□ -0.47
USF1-210ENST00000531842 FZD9O00144 591 aa12.1□□□□□ -0.47
USF1-210ENST00000531842 PER1O15534 1290 aaPredicted RBP12.1□□□□□ -0.47
USF1-210ENST00000531842 NGEFQ8N5V2 710 aa12.1□□□□□ -0.47
USF1-210ENST00000531842 TEX13AQ9BXU3 409 aaPredicted RBP12.1□□□□□ -0.47
USF1-210ENST00000531842 TIMELESSQ9UNS1 1208 aa12.1□□□□□ -0.47
USF1-210ENST00000531842 DLG5Q8TDM6 1919 aa12.09□□□□□ -0.47
USF1-210ENST00000531842 KLRG2A4D1S0 409 aaPredicted RBP12.09□□□□□ -0.47
USF1-210ENST00000531842 PRKAR2BP31323 418 aa12.09□□□□□ -0.47
USF1-210ENST00000531842 SOGA3Q5TF21 947 aa12.09□□□□□ -0.47
USF1-210ENST00000531842 NPM2Q86SE8 214 aaKnown RBP12.09□□□□□ -0.47
USF1-210ENST00000531842 DDX21Q9NR30 783 aaKnown RBP eCLIP12.09□□□□□ -0.47
USF1-210ENST00000531842 MIS18AQ9NYP9 233 aa12.09□□□□□ -0.47
USF1-210ENST00000531842 LAMB4A4D0S4 1761 aa12.09□□□□□ -0.47
USF1-210ENST00000531842 CST9Q5W186 159 aa12.08□□□□□ -0.48
USF1-210ENST00000531842 C3orf67Q6ZVT6 689 aa12.08□□□□□ -0.48
USF1-210ENST00000531842 GAS2L2Q8NHY3 880 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms