RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 GTF2E1P29083 439 aaPredicted RBP16.12■□□□□ 0.17
USH1C-208ENST00000529563 DCTN1Q14203 1278 aa16.12■□□□□ 0.17
USH1C-208ENST00000529563 SOGA3Q5TF21 947 aa16.12■□□□□ 0.17
USH1C-208ENST00000529563 KLRG1Q96E93 195 aa16.12■□□□□ 0.17
USH1C-208ENST00000529563 MASTLQ96GX5 879 aa16.12■□□□□ 0.17
USH1C-208ENST00000529563 TAOK3Q9H2K8 898 aa16.12■□□□□ 0.17
USH1C-208ENST00000529563 TIAM2Q8IVF5 1701 aa16.11■□□□□ 0.17
USH1C-208ENST00000529563 PRAMEF22A3QJZ6 481 aa16.11■□□□□ 0.17
USH1C-208ENST00000529563 FAM177BA6PVY3 158 aa16.11■□□□□ 0.17
USH1C-208ENST00000529563 STYK1Q6J9G0 422 aa16.11■□□□□ 0.17
USH1C-208ENST00000529563 HTATSF1O43719 755 aaKnown RBP16.1■□□□□ 0.17
USH1C-208ENST00000529563 PRELPP51888 382 aa16.1■□□□□ 0.17
USH1C-208ENST00000529563 PRPF40BQ6NWY9 871 aaKnown RBP16.1■□□□□ 0.17
USH1C-208ENST00000529563 CLEC4GQ6UXB4 293 aa16.1■□□□□ 0.17
USH1C-208ENST00000529563 NIP7Q9Y221 180 aaKnown RBP eCLIP16.1■□□□□ 0.17
USH1C-208ENST00000529563 TAF7Q15545 349 aaPredicted RBP16.09■□□□□ 0.17
USH1C-208ENST00000529563 TPTE2Q6XPS3 522 aa16.09■□□□□ 0.17
USH1C-208ENST00000529563 CCDC88AQ3V6T2 1871 aa16.09■□□□□ 0.17
USH1C-208ENST00000529563 ANKRD31Q8N7Z5 1873 aa16.09■□□□□ 0.17
USH1C-208ENST00000529563 SRGNP10124 158 aa16.08■□□□□ 0.16
USH1C-208ENST00000529563 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
USH1C-208ENST00000529563 MIS18AQ9NYP9 233 aa16.08■□□□□ 0.16
USH1C-208ENST00000529563 NPR1P16066 1061 aa16.07■□□□□ 0.16
USH1C-208ENST00000529563 PNISRQ8TF01 805 aaKnown RBP16.07■□□□□ 0.16
USH1C-208ENST00000529563 COL11A2P13942 1736 aaPredicted RBP16.07■□□□□ 0.16
USH1C-208ENST00000529563 BCORQ6W2J9 1755 aa16.06■□□□□ 0.16
USH1C-208ENST00000529563 LTBP3Q9NS15 1303 aa16.06■□□□□ 0.16
USH1C-208ENST00000529563 MAPK8IP3Q9UPT6 1336 aa16.06■□□□□ 0.16
USH1C-208ENST00000529563 CCDC93Q567U6 631 aa16.06■□□□□ 0.16
USH1C-208ENST00000529563 PNNQ9H307 717 aaKnown RBP16.06■□□□□ 0.16
USH1C-208ENST00000529563 CACNA1SQ13698 1873 aa16.05■□□□□ 0.16
USH1C-208ENST00000529563 KIF6Q6ZMV9 814 aa16.05■□□□□ 0.16
USH1C-208ENST00000529563 NBPF26B4DH59 902 aa16.04■□□□□ 0.16
USH1C-208ENST00000529563 DDNO94850 711 aaPredicted RBP16.04■□□□□ 0.16
USH1C-208ENST00000529563 NBPF10Q6P3W6 841 aaKnown RBP16.04■□□□□ 0.16
USH1C-208ENST00000529563 NBPF15Q8N660 670 aa16.04■□□□□ 0.16
USH1C-208ENST00000529563 RRP7AQ9Y3A4 280 aaKnown RBP16.04■□□□□ 0.16
USH1C-208ENST00000529563 IQCA1LA6NCM1 817 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 ALDH1B1P30837 517 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 JMYQ8N9B5 988 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 NYXQ9GZU5 481 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 FER1L6Q2WGJ9 1857 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 SLX4Q8IY92 1834 aa16.03■□□□□ 0.16
USH1C-208ENST00000529563 MYL6BP14649 208 aa16.02■□□□□ 0.16
USH1C-208ENST00000529563 CHADLQ6NUI6 762 aa16.02■□□□□ 0.16
USH1C-208ENST00000529563 RTKN2Q8IZC4 609 aa16.02■□□□□ 0.16
USH1C-208ENST00000529563 POTECB2RU33 542 aa16.01■□□□□ 0.15
USH1C-208ENST00000529563 RGL2O15211 777 aa16.01■□□□□ 0.15
USH1C-208ENST00000529563 FKBP4Q02790 459 aaKnown RBP eCLIP16.01■□□□□ 0.15
USH1C-208ENST00000529563 NFE2L2Q16236 605 aa16.01■□□□□ 0.15
USH1C-208ENST00000529563 HLFQ16534 295 aa16.01■□□□□ 0.15
USH1C-208ENST00000529563 ZNF277Q9NRM2 450 aaPredicted RBP16.01■□□□□ 0.15
USH1C-208ENST00000529563 DICER1Q9UPY3 1922 aaKnown RBP16■□□□□ 0.15
USH1C-208ENST00000529563 EAPPQ56P03 285 aaPredicted RBP16■□□□□ 0.15
USH1C-208ENST00000529563 RPGRQ92834 1020 aaKnown RBP16■□□□□ 0.15
USH1C-208ENST00000529563 CLEC11AQ9Y240 323 aa16■□□□□ 0.15
USH1C-208ENST00000529563 NUTM1Q86Y26 1132 aa15.99■□□□□ 0.15
USH1C-208ENST00000529563 THUMPD2Q9BTF0 503 aaKnown RBP15.99■□□□□ 0.15
USH1C-208ENST00000529563 ZBTB3Q9H5J0 574 aa15.99■□□□□ 0.15
USH1C-208ENST00000529563 ARFGEF2Q9Y6D5 1785 aa15.99■□□□□ 0.15
USH1C-208ENST00000529563 MAP3K15Q6ZN16 1313 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 LAMB4A4D0S4 1761 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 ERVV-1B6SEH8 477 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 GPTP24298 496 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 EIF4A1P60842 406 aaKnown RBP15.98■□□□□ 0.15
USH1C-208ENST00000529563 JDP2Q8WYK2 163 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 TMX4Q9H1E5 349 aaPredicted RBP15.98■□□□□ 0.15
USH1C-208ENST00000529563 TSPYL4Q9UJ04 414 aa15.98■□□□□ 0.15
USH1C-208ENST00000529563 KLRG2A4D1S0 409 aaPredicted RBP15.97■□□□□ 0.15
USH1C-208ENST00000529563 CAPN15O75808 1086 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 COL13A1Q5TAT6 717 aaPredicted RBP15.97■□□□□ 0.15
USH1C-208ENST00000529563 OLFM4Q6UX06 510 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 LDHDQ86WU2 507 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 TNS4Q8IZW8 715 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 SYNE4Q8N205 404 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 C7orf43Q8WVR3 580 aa15.97■□□□□ 0.15
USH1C-208ENST00000529563 HSPA1AP0DMV8 641 aaKnown RBP15.96■□□□□ 0.15
USH1C-208ENST00000529563 HSPA1BP0DMV9 641 aaKnown RBP15.96■□□□□ 0.15
USH1C-208ENST00000529563 IARSP41252 1262 aaKnown RBP15.96■□□□□ 0.15
USH1C-208ENST00000529563 TTLL7Q6ZT98 887 aa15.96■□□□□ 0.15
USH1C-208ENST00000529563 RBM17Q96I25 401 aaKnown RBP15.96■□□□□ 0.15
USH1C-208ENST00000529563 CREBZFQ9NS37 354 aa15.96■□□□□ 0.15
USH1C-208ENST00000529563 MKRN1Q9UHC7 482 aaKnown RBP15.96■□□□□ 0.15
USH1C-208ENST00000529563 HACL1Q9UJ83 578 aa15.96■□□□□ 0.15
USH1C-208ENST00000529563 ZNF316A6NFI3 1004 aaPredicted RBP15.95■□□□□ 0.14
USH1C-208ENST00000529563 TCERG1O14776 1098 aaKnown RBP15.95■□□□□ 0.14
USH1C-208ENST00000529563 POTEIP0CG38 1075 aa15.95■□□□□ 0.14
USH1C-208ENST00000529563 POTEJP0CG39 1038 aa15.95■□□□□ 0.14
USH1C-208ENST00000529563 EIF2S2P20042 333 aaKnown RBP15.95■□□□□ 0.14
USH1C-208ENST00000529563 EIF6P56537 245 aaKnown RBP15.95■□□□□ 0.14
USH1C-208ENST00000529563 PPP1R42Q7Z4L9 355 aa15.95■□□□□ 0.14
USH1C-208ENST00000529563 PLEKHF1Q96S99 279 aa15.95■□□□□ 0.14
USH1C-208ENST00000529563 TAF1DQ9H5J8 278 aaPredicted RBP15.95■□□□□ 0.14
USH1C-208ENST00000529563 DLG5Q8TDM6 1919 aa15.95■□□□□ 0.14
USH1C-208ENST00000529563 ZNF541Q9H0D2 1346 aa15.94■□□□□ 0.14
USH1C-208ENST00000529563 RIPK4P57078 832 aa15.94■□□□□ 0.14
USH1C-208ENST00000529563 LMOD3Q0VAK6 560 aa15.94■□□□□ 0.14
USH1C-208ENST00000529563 DDX10Q13206 875 aaKnown RBP15.94■□□□□ 0.14
USH1C-208ENST00000529563 CC2D2BQ6DHV5 1058 aa15.94■□□□□ 0.14
USH1C-208ENST00000529563 L3MBTL3Q96JM7 780 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms