RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 BRIP1Q9BX63 1249 aa12.2□□□□□ -0.46
VPS11-203ENST00000529545 VIRMAQ69YN4 1812 aaKnown RBP12.2□□□□□ -0.46
VPS11-203ENST00000529545 C21orf2O43822 256 aa12.19□□□□□ -0.46
VPS11-203ENST00000529545 MRC1P22897 1456 aa12.19□□□□□ -0.46
VPS11-203ENST00000529545 DICER1Q9UPY3 1922 aaKnown RBP12.19□□□□□ -0.46
VPS11-203ENST00000529545 CARMIL3Q8ND23 1372 aa12.18□□□□□ -0.46
VPS11-203ENST00000529545 POTECB2RU33 542 aa12.18□□□□□ -0.46
VPS11-203ENST00000529545 HMOX1P09601 288 aa12.18□□□□□ -0.46
VPS11-203ENST00000529545 EIF5P55010 431 aaKnown RBP12.18□□□□□ -0.46
VPS11-203ENST00000529545 TEX13AQ9BXU3 409 aaPredicted RBP12.18□□□□□ -0.46
VPS11-203ENST00000529545 TAOK3Q9H2K8 898 aa12.18□□□□□ -0.46
VPS11-203ENST00000529545 MKRN1Q9UHC7 482 aaKnown RBP12.18□□□□□ -0.46
VPS11-203ENST00000529545 ZNF330Q9Y3S2 320 aaPredicted RBP12.18□□□□□ -0.46
VPS11-203ENST00000529545 IQCA1LA6NCM1 817 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 HSPA5P11021 654 aaKnown RBP12.17□□□□□ -0.46
VPS11-203ENST00000529545 TRIM26Q12899 539 aaPredicted RBP12.17□□□□□ -0.46
VPS11-203ENST00000529545 MTHFSDQ2M296 383 aaKnown RBP12.17□□□□□ -0.46
VPS11-203ENST00000529545 SOGA3Q5TF21 947 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 TBC1D9BQ66K14 1250 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 CNKSR1Q969H4 720 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 AIDAQ96BJ3 306 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 FER1L6Q2WGJ9 1857 aa12.17□□□□□ -0.46
VPS11-203ENST00000529545 LTBP3Q9NS15 1303 aa12.16□□□□□ -0.46
VPS11-203ENST00000529545 ST5P78524 1137 aa12.16□□□□□ -0.46
VPS11-203ENST00000529545 TEFQ10587 303 aa12.16□□□□□ -0.46
VPS11-203ENST00000529545 CNBD1Q8NA66 436 aa12.16□□□□□ -0.46
VPS11-203ENST00000529545 SETDB2Q96T68 719 aa12.16□□□□□ -0.46
VPS11-203ENST00000529545 CLSPNQ9HAW4 1339 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 ANKRD31Q8N7Z5 1873 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 DIAPH1O60610 1272 aaKnown RBP12.15□□□□□ -0.46
VPS11-203ENST00000529545 DDNO94850 711 aaPredicted RBP12.15□□□□□ -0.46
VPS11-203ENST00000529545 PRR5LQ6MZQ0 368 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 CCDC24Q8N4L8 307 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 TBC1D2BQ9UPU7 963 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 UBR2Q8IWV8 1755 aa12.15□□□□□ -0.46
VPS11-203ENST00000529545 IL6STP40189 918 aaPredicted RBP12.14□□□□□ -0.47
VPS11-203ENST00000529545 STYK1Q6J9G0 422 aa12.14□□□□□ -0.47
VPS11-203ENST00000529545 LDHDQ86WU2 507 aa12.14□□□□□ -0.47
VPS11-203ENST00000529545 ZNF496Q96IT1 587 aaPredicted RBP12.14□□□□□ -0.47
VPS11-203ENST00000529545 PRDM10Q9NQV6 1147 aa12.14□□□□□ -0.47
VPS11-203ENST00000529545 SCN7AQ01118 1682 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 PCNTO95613 3336 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 CTCFP49711 727 aaPredicted RBP12.13□□□□□ -0.47
VPS11-203ENST00000529545 PRPF40BQ6NWY9 871 aaKnown RBP12.13□□□□□ -0.47
VPS11-203ENST00000529545 ZNF790Q6PG37 636 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 MASTLQ96GX5 879 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 CNTNAP1P78357 1384 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 HEG1Q9ULI3 1381 aa12.13□□□□□ -0.47
VPS11-203ENST00000529545 CACNA1SQ13698 1873 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 COL11A2P13942 1736 aaPredicted RBP12.12□□□□□ -0.47
VPS11-203ENST00000529545 SCN4AP35499 1836 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 GNAT3A8MTJ3 354 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 FOXN1O15353 648 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 POTEIP0CG38 1075 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 POTEJP0CG39 1038 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 SRGNP10124 158 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 FMNL2Q96PY5 1086 aa12.12□□□□□ -0.47
VPS11-203ENST00000529545 SLX4Q8IY92 1834 aa12.11□□□□□ -0.47
VPS11-203ENST00000529545 TMEM88BA6NKF7 163 aa12.11□□□□□ -0.47
VPS11-203ENST00000529545 CCDC93Q567U6 631 aa12.11□□□□□ -0.47
VPS11-203ENST00000529545 EAPPQ56P03 285 aaPredicted RBP12.11□□□□□ -0.47
VPS11-203ENST00000529545 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
VPS11-203ENST00000529545 GAS2L2Q8NHY3 880 aa12.11□□□□□ -0.47
VPS11-203ENST00000529545 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
VPS11-203ENST00000529545 PCGF6Q9BYE7 350 aa12.11□□□□□ -0.47
VPS11-203ENST00000529545 TAF1DQ9H5J8 278 aaPredicted RBP12.11□□□□□ -0.47
VPS11-203ENST00000529545 ARFGEF2Q9Y6D5 1785 aa12.1□□□□□ -0.47
VPS11-203ENST00000529545 U2SURPO15042 1029 aaKnown RBP12.1□□□□□ -0.47
VPS11-203ENST00000529545 CAMTA2O94983 1202 aa12.1□□□□□ -0.47
VPS11-203ENST00000529545 A1BGP04217 495 aa12.1□□□□□ -0.47
VPS11-203ENST00000529545 NBPF5PQ86XG9 351 aaPredicted RBP12.1□□□□□ -0.47
VPS11-203ENST00000529545 DZIP3Q86Y13 1208 aaKnown RBP12.1□□□□□ -0.47
VPS11-203ENST00000529545 ZNF652Q9Y2D9 606 aa12.1□□□□□ -0.47
VPS11-203ENST00000529545 PASKQ96RG2 1323 aa12.1□□□□□ -0.47
VPS11-203ENST00000529545 NPR1P16066 1061 aa12.09□□□□□ -0.47
VPS11-203ENST00000529545 VEGFBP49765 207 aa12.09□□□□□ -0.47
VPS11-203ENST00000529545 IL17REQ8NFR9 667 aa12.09□□□□□ -0.47
VPS11-203ENST00000529545 HACL1Q9UJ83 578 aa12.09□□□□□ -0.47
VPS11-203ENST00000529545 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS11-203ENST00000529545 CC2D1BQ5T0F9 858 aaKnown RBP12.08□□□□□ -0.48
VPS11-203ENST00000529545 CLEC4GQ6UXB4 293 aa12.08□□□□□ -0.48
VPS11-203ENST00000529545 TPTE2Q6XPS3 522 aa12.08□□□□□ -0.48
VPS11-203ENST00000529545 PNMA8AQ86V59 439 aaPredicted RBP12.08□□□□□ -0.48
VPS11-203ENST00000529545 RTKN2Q8IZC4 609 aa12.08□□□□□ -0.48
VPS11-203ENST00000529545 BTBD11A6QL63 1104 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 ITGBL1O95965 494 aaPredicted RBP12.07□□□□□ -0.48
VPS11-203ENST00000529545 ALDH1B1P30837 517 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 EPHX2P34913 555 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 VASPP50552 380 aaPredicted RBP12.07□□□□□ -0.48
VPS11-203ENST00000529545 LBX1P52954 281 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 DEFB115Q30KQ5 88 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 ZNF277Q9NRM2 450 aaPredicted RBP12.07□□□□□ -0.48
VPS11-203ENST00000529545 WBP1LQ9NX94 342 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 SIPA1L3O60292 1781 aaPredicted RBP12.07□□□□□ -0.48
VPS11-203ENST00000529545 BCORQ6W2J9 1755 aa12.07□□□□□ -0.48
VPS11-203ENST00000529545 GTF2E1P29083 439 aaPredicted RBP12.06□□□□□ -0.48
VPS11-203ENST00000529545 MAP2K1Q02750 393 aaPredicted RBP12.06□□□□□ -0.48
VPS11-203ENST00000529545 CNTROBQ8N137 903 aa12.06□□□□□ -0.48
VPS11-203ENST00000529545 C7orf43Q8WVR3 580 aa12.06□□□□□ -0.48
VPS11-203ENST00000529545 RASSF10A6NK89 507 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms