RNA–Protein interactions for RNA: ENST00000529205.1

HIF3A-212, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-212ENST00000529205 CLEC4GQ6UXB4 293 aa18.12■□□□□ 0.49
HIF3A-212ENST00000529205 NBPF5PQ86XG9 351 aaPredicted RBP18.12■□□□□ 0.49
HIF3A-212ENST00000529205 SCN7AQ01118 1682 aa18.12■□□□□ 0.49
HIF3A-212ENST00000529205 FER1L6Q2WGJ9 1857 aa18.12■□□□□ 0.49
HIF3A-212ENST00000529205 DICER1Q9UPY3 1922 aaKnown RBP18.11■□□□□ 0.49
HIF3A-212ENST00000529205 NPR1P16066 1061 aa18.11■□□□□ 0.49
HIF3A-212ENST00000529205 CCER1Q8TC90 406 aaPredicted RBP18.11■□□□□ 0.49
HIF3A-212ENST00000529205 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
HIF3A-212ENST00000529205 ANKRD31Q8N7Z5 1873 aa18.11■□□□□ 0.49
HIF3A-212ENST00000529205 PER1O15534 1290 aaPredicted RBP18.1■□□□□ 0.49
HIF3A-212ENST00000529205 POTEIP0CG38 1075 aa18.1■□□□□ 0.49
HIF3A-212ENST00000529205 POTEJP0CG39 1038 aa18.1■□□□□ 0.49
HIF3A-212ENST00000529205 TPTE2Q6XPS3 522 aa18.1■□□□□ 0.49
HIF3A-212ENST00000529205 L3MBTL3Q96JM7 780 aaPredicted RBP18.1■□□□□ 0.49
HIF3A-212ENST00000529205 CNTNAP1P78357 1384 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 TMEM88BA6NKF7 163 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 EAPPQ56P03 285 aaPredicted RBP18.09■□□□□ 0.49
HIF3A-212ENST00000529205 RTKN2Q8IZC4 609 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 RTF1Q92541 710 aaKnown RBP18.09■□□□□ 0.49
HIF3A-212ENST00000529205 CFAP53Q96M91 514 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 TAF1DQ9H5J8 278 aaPredicted RBP18.09■□□□□ 0.49
HIF3A-212ENST00000529205 PRDM10Q9NQV6 1147 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
HIF3A-212ENST00000529205 FKBP4Q02790 459 aaKnown RBP eCLIP18.08■□□□□ 0.48
HIF3A-212ENST00000529205 CNGB1Q14028 1251 aaPredicted RBP18.08■□□□□ 0.48
HIF3A-212ENST00000529205 PNMA8AQ86V59 439 aaPredicted RBP18.08■□□□□ 0.48
HIF3A-212ENST00000529205 HACL1Q9UJ83 578 aa18.08■□□□□ 0.48
HIF3A-212ENST00000529205 USP16Q9Y5T5 823 aa18.08■□□□□ 0.48
HIF3A-212ENST00000529205 COL11A2P13942 1736 aaPredicted RBP18.08■□□□□ 0.48
HIF3A-212ENST00000529205 PASKQ96RG2 1323 aa18.07■□□□□ 0.48
HIF3A-212ENST00000529205 FOXN1O15353 648 aa18.07■□□□□ 0.48
HIF3A-212ENST00000529205 SNRPA1P09661 255 aaKnown RBP18.07■□□□□ 0.48
HIF3A-212ENST00000529205 GTF2E1P29083 439 aaPredicted RBP18.07■□□□□ 0.48
HIF3A-212ENST00000529205 ALDH1B1P30837 517 aa18.07■□□□□ 0.48
HIF3A-212ENST00000529205 CTCFP49711 727 aaPredicted RBP18.07■□□□□ 0.48
HIF3A-212ENST00000529205 CEMIPQ8WUJ3 1361 aa18.06■□□□□ 0.48
HIF3A-212ENST00000529205 C7orf43Q8WVR3 580 aa18.06■□□□□ 0.48
HIF3A-212ENST00000529205 NIP7Q9Y221 180 aaKnown RBP eCLIP18.06■□□□□ 0.48
HIF3A-212ENST00000529205 NUDCQ9Y266 331 aa18.06■□□□□ 0.48
HIF3A-212ENST00000529205 SLX4Q8IY92 1834 aa18.05■□□□□ 0.48
HIF3A-212ENST00000529205 RGL2O15211 777 aa18.05■□□□□ 0.48
HIF3A-212ENST00000529205 KCNQ3O43525 872 aa18.05■□□□□ 0.48
HIF3A-212ENST00000529205 PRKAR2BP31323 418 aa18.05■□□□□ 0.48
HIF3A-212ENST00000529205 ZNF277Q9NRM2 450 aaPredicted RBP18.05■□□□□ 0.48
HIF3A-212ENST00000529205 SCN4AP35499 1836 aa18.05■□□□□ 0.48
HIF3A-212ENST00000529205 NPC1L1Q9UHC9 1359 aa18.04■□□□□ 0.48
HIF3A-212ENST00000529205 EPHX2P34913 555 aa18.04■□□□□ 0.48
HIF3A-212ENST00000529205 PIP4K2AP48426 406 aaPredicted RBP18.04■□□□□ 0.48
HIF3A-212ENST00000529205 VEGFBP49765 207 aa18.04■□□□□ 0.48
HIF3A-212ENST00000529205 KLRG2A4D1S0 409 aaPredicted RBP18.03■□□□□ 0.48
HIF3A-212ENST00000529205 ITGBL1O95965 494 aaPredicted RBP18.03■□□□□ 0.48
HIF3A-212ENST00000529205 JDP2Q8WYK2 163 aa18.03■□□□□ 0.48
HIF3A-212ENST00000529205 ARFGEF2Q9Y6D5 1785 aa18.03■□□□□ 0.48
HIF3A-212ENST00000529205 CACNA1SQ13698 1873 aa18.03■□□□□ 0.48
HIF3A-212ENST00000529205 COL3A1P02461 1466 aaPredicted RBP18.02■□□□□ 0.48
HIF3A-212ENST00000529205 SIPA1L3O60292 1781 aaPredicted RBP18.02■□□□□ 0.48
HIF3A-212ENST00000529205 FAM177BA6PVY3 158 aa18.02■□□□□ 0.48
HIF3A-212ENST00000529205 IARSP41252 1262 aaKnown RBP18.02■□□□□ 0.48
HIF3A-212ENST00000529205 DEFB115Q30KQ5 88 aa18.02■□□□□ 0.48
HIF3A-212ENST00000529205 PHACTR3Q96KR7 559 aa18.02■□□□□ 0.48
HIF3A-212ENST00000529205 BCORQ6W2J9 1755 aa18.02■□□□□ 0.47
HIF3A-212ENST00000529205 ZNF541Q9H0D2 1346 aa18.01■□□□□ 0.47
HIF3A-212ENST00000529205 MAP2K1Q02750 393 aaPredicted RBP18.01■□□□□ 0.47
HIF3A-212ENST00000529205 CNTROBQ8N137 903 aa18.01■□□□□ 0.47
HIF3A-212ENST00000529205 GPC2Q8N158 579 aa18.01■□□□□ 0.47
HIF3A-212ENST00000529205 SYNE4Q8N205 404 aa18.01■□□□□ 0.47
HIF3A-212ENST00000529205 PCNTO95613 3336 aa18■□□□□ 0.47
HIF3A-212ENST00000529205 EIF6P56537 245 aaKnown RBP18■□□□□ 0.47
HIF3A-212ENST00000529205 CC2D2BQ6DHV5 1058 aa18■□□□□ 0.47
HIF3A-212ENST00000529205 NYXQ9GZU5 481 aa18■□□□□ 0.47
HIF3A-212ENST00000529205 RSPH6AQ9H0K4 717 aa18■□□□□ 0.47
HIF3A-212ENST00000529205 WBP1LQ9NX94 342 aa18■□□□□ 0.47
HIF3A-212ENST00000529205 ABT1Q9ULW3 272 aaKnown RBP18■□□□□ 0.47
HIF3A-212ENST00000529205 RNF123Q5XPI4 1314 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 PRAMEF22A3QJZ6 481 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 RASSF10A6NK89 507 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 FZD9O00144 591 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 U2AF1L5P0DN76 240 aaPredicted RBP17.99■□□□□ 0.47
HIF3A-212ENST00000529205 LMOD1P29536 600 aaPredicted RBP17.99■□□□□ 0.47
HIF3A-212ENST00000529205 LBX1P52954 281 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 U2AF1Q01081 240 aaKnown RBP eCLIP17.99■□□□□ 0.47
HIF3A-212ENST00000529205 GRIPAP1Q4V328 841 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 MCM10Q7L590 875 aa17.99■□□□□ 0.47
HIF3A-212ENST00000529205 HTATSF1O43719 755 aaKnown RBP17.98■□□□□ 0.47
HIF3A-212ENST00000529205 MAP1SQ66K74 1059 aaPredicted RBP17.98■□□□□ 0.47
HIF3A-212ENST00000529205 PSMD1Q99460 953 aa17.98■□□□□ 0.47
HIF3A-212ENST00000529205 NEFMP07197 916 aa17.97■□□□□ 0.47
HIF3A-212ENST00000529205 OLFM4Q6UX06 510 aa17.97■□□□□ 0.47
HIF3A-212ENST00000529205 BEGAINQ9BUH8 593 aa17.97■□□□□ 0.47
HIF3A-212ENST00000529205 TMX4Q9H1E5 349 aaPredicted RBP17.97■□□□□ 0.47
HIF3A-212ENST00000529205 GJA3Q9Y6H8 435 aa17.97■□□□□ 0.47
HIF3A-212ENST00000529205 WDR33Q9C0J8 1336 aaKnown RBP17.97■□□□□ 0.47
HIF3A-212ENST00000529205 NBPF26B4DH59 902 aa17.96■□□□□ 0.47
HIF3A-212ENST00000529205 TAF7Q15545 349 aaPredicted RBP17.96■□□□□ 0.47
HIF3A-212ENST00000529205 NBPF10Q6P3W6 841 aaKnown RBP17.96■□□□□ 0.47
HIF3A-212ENST00000529205 NBPF15Q8N660 670 aa17.96■□□□□ 0.47
HIF3A-212ENST00000529205 RPGRQ92834 1020 aaKnown RBP17.96■□□□□ 0.47
HIF3A-212ENST00000529205 ECE1P42892 770 aa17.95■□□□□ 0.46
HIF3A-212ENST00000529205 HLFQ16534 295 aa17.95■□□□□ 0.46
HIF3A-212ENST00000529205 ERVV-1B6SEH8 477 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms