RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 FBXO22Q8NEZ5 403 aa11.87□□□□□ -0.51
SSBP3-212ENST00000528930 PUS7Q96PZ0 661 aaKnown RBP11.87□□□□□ -0.51
SSBP3-212ENST00000528930 CD163L1Q9NR16 1453 aa11.87□□□□□ -0.51
SSBP3-212ENST00000528930 ZNF831Q5JPB2 1677 aa11.87□□□□□ -0.51
SSBP3-212ENST00000528930 MEGF6O75095 1541 aa11.86□□□□□ -0.51
SSBP3-212ENST00000528930 ANKRD24Q8TF21 1146 aa11.86□□□□□ -0.51
SSBP3-212ENST00000528930 STK24Q9Y6E0 443 aa11.86□□□□□ -0.51
SSBP3-212ENST00000528930 TTC21BQ7Z4L5 1316 aa11.86□□□□□ -0.51
SSBP3-212ENST00000528930 ZNF316A6NFI3 1004 aaPredicted RBP11.85□□□□□ -0.51
SSBP3-212ENST00000528930 DGKZQ13574 1117 aa11.85□□□□□ -0.51
SSBP3-212ENST00000528930 SLC12A5Q9H2X9 1139 aa11.85□□□□□ -0.51
SSBP3-212ENST00000528930 AFDNP55196 1824 aaKnown RBP11.84□□□□□ -0.51
SSBP3-212ENST00000528930 SLC24A1O60721 1099 aa11.84□□□□□ -0.51
SSBP3-212ENST00000528930 FXR1P51114 621 aaKnown RBP eCLIP11.84□□□□□ -0.51
SSBP3-212ENST00000528930 LDHDQ86WU2 507 aa11.84□□□□□ -0.51
SSBP3-212ENST00000528930 NLGN1Q8N2Q7 840 aa11.84□□□□□ -0.51
SSBP3-212ENST00000528930 BEGAINQ9BUH8 593 aa11.84□□□□□ -0.51
SSBP3-212ENST00000528930 KTN1Q86UP2 1357 aaKnown RBP11.83□□□□□ -0.52
SSBP3-212ENST00000528930 LINC00116Q8NCU8 138 aa11.83□□□□□ -0.52
SSBP3-212ENST00000528930 TMC1Q8TDI8 760 aa11.83□□□□□ -0.52
SSBP3-212ENST00000528930 MFRPQ9BY79 579 aa11.83□□□□□ -0.52
SSBP3-212ENST00000528930 TSKSQ9UJT2 592 aa11.83□□□□□ -0.52
SSBP3-212ENST00000528930 TTC21AQ8NDW8 1320 aa11.83□□□□□ -0.52
SSBP3-212ENST00000528930 NRXN2Q9P2S2 1712 aa11.82□□□□□ -0.52
SSBP3-212ENST00000528930 MYH14Q7Z406 1995 aaKnown RBP11.81□□□□□ -0.52
SSBP3-212ENST00000528930 GNPATO15228 680 aa11.81□□□□□ -0.52
SSBP3-212ENST00000528930 ZCRB1Q8TBF4 217 aaKnown RBP11.81□□□□□ -0.52
SSBP3-212ENST00000528930 PITPNM2Q9BZ72 1349 aa11.81□□□□□ -0.52
SSBP3-212ENST00000528930 A0A1W2PP64 1363 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 C2orf72A6NCS6 295 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 NFKBIEO00221 500 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 CA12O43570 354 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 NUDT7P0C024 238 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 TMF1P82094 1093 aa11.8□□□□□ -0.52
SSBP3-212ENST00000528930 HDGFL2Q7Z4V5 671 aaPredicted RBP11.8□□□□□ -0.52
SSBP3-212ENST00000528930 SMARCC1Q92922 1105 aaPredicted RBP11.8□□□□□ -0.52
SSBP3-212ENST00000528930 USP31Q70CQ4 1352 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 CHRNA5P30532 468 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 NME9Q86XW9 330 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.79□□□□□ -0.52
SSBP3-212ENST00000528930 CAPNS2Q96L46 248 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 TERF2IPQ9NYB0 399 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 PARP3Q9Y6F1 533 aa11.79□□□□□ -0.52
SSBP3-212ENST00000528930 EDC4Q6P2E9 1401 aaKnown RBP11.78□□□□□ -0.52
SSBP3-212ENST00000528930 GYS1P13807 737 aa11.78□□□□□ -0.52
SSBP3-212ENST00000528930 NBPF15Q8N660 670 aa11.78□□□□□ -0.52
SSBP3-212ENST00000528930 STK25O00506 426 aa11.77□□□□□ -0.53
SSBP3-212ENST00000528930 ECE1P42892 770 aa11.77□□□□□ -0.53
SSBP3-212ENST00000528930 LSM11P83369 360 aaKnown RBP eCLIP11.77□□□□□ -0.53
SSBP3-212ENST00000528930 GPR101Q96P66 508 aaPredicted RBP11.77□□□□□ -0.53
SSBP3-212ENST00000528930 LOC102724428A0A0B4J2F2 783 aa11.76□□□□□ -0.53
SSBP3-212ENST00000528930 SIK1P57059 783 aa11.76□□□□□ -0.53
SSBP3-212ENST00000528930 ITPK1Q13572 414 aa11.76□□□□□ -0.53
SSBP3-212ENST00000528930 TAF1DQ9H5J8 278 aaPredicted RBP11.76□□□□□ -0.53
SSBP3-212ENST00000528930 CACNA1SQ13698 1873 aa11.76□□□□□ -0.53
SSBP3-212ENST00000528930 ARFGEF2Q9Y6D5 1785 aa11.75□□□□□ -0.53
SSBP3-212ENST00000528930 IQCA1LA6NCM1 817 aa11.75□□□□□ -0.53
SSBP3-212ENST00000528930 MAP2K2P36507 400 aa11.75□□□□□ -0.53
SSBP3-212ENST00000528930 CDCA8Q53HL2 280 aa11.75□□□□□ -0.53
SSBP3-212ENST00000528930 ABT1Q9ULW3 272 aaKnown RBP11.75□□□□□ -0.53
SSBP3-212ENST00000528930 SMG6Q86US8 1419 aaKnown RBP11.75□□□□□ -0.53
SSBP3-212ENST00000528930 DDNO94850 711 aaPredicted RBP11.74□□□□□ -0.53
SSBP3-212ENST00000528930 HSPA5P11021 654 aaKnown RBP11.74□□□□□ -0.53
SSBP3-212ENST00000528930 EIF4G2P78344 907 aaKnown RBP eCLIP11.74□□□□□ -0.53
SSBP3-212ENST00000528930 POTEEQ6S8J3 1075 aa11.74□□□□□ -0.53
SSBP3-212ENST00000528930 MPRIPQ6WCQ1 1025 aa11.74□□□□□ -0.53
SSBP3-212ENST00000528930 SCN11AQ9UI33 1791 aa11.74□□□□□ -0.53
SSBP3-212ENST00000528930 COL11A2P13942 1736 aaPredicted RBP11.73□□□□□ -0.53
SSBP3-212ENST00000528930 KDRP35968 1356 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 DDR1Q08345 913 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 CGNL1Q0VF96 1302 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 TRAPPC3LQ5T215 181 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 CYP4F22Q6NT55 531 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 ANKRD31Q8N7Z5 1873 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 LHX6Q9UPM6 363 aa11.73□□□□□ -0.53
SSBP3-212ENST00000528930 AKAP11Q9UKA4 1901 aa11.72□□□□□ -0.53
SSBP3-212ENST00000528930 ERFEQ4G0M1 354 aa11.72□□□□□ -0.53
SSBP3-212ENST00000528930 ARHGEF1Q92888 912 aaKnown RBP11.72□□□□□ -0.53
SSBP3-212ENST00000528930 RBBP6Q7Z6E9 1792 aaKnown RBP11.72□□□□□ -0.53
SSBP3-212ENST00000528930 INSRP06213 1382 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 SZT2Q5T011 3432 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 FYB1O15117 783 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 ECM2O94769 699 aaPredicted RBP11.71□□□□□ -0.53
SSBP3-212ENST00000528930 BRPF1P55201 1214 aaPredicted RBP11.71□□□□□ -0.53
SSBP3-212ENST00000528930 SLC17A8Q8NDX2 589 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 CARD14Q9BXL6 1004 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 TAOK2Q9UL54 1235 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 RTCBQ9Y3I0 505 aaKnown RBP11.71□□□□□ -0.53
SSBP3-212ENST00000528930 PCDHGA4Q9Y5G9 962 aa11.71□□□□□ -0.53
SSBP3-212ENST00000528930 PCDH11XQ9BZA7 1347 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 PCDH11YQ9BZA8 1340 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 LTBP3Q9NS15 1303 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 AOC2O75106 756 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 CNTROBQ8N137 903 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 PIGBQ92521 554 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 IP6K1Q92551 441 aa11.7□□□□□ -0.54
SSBP3-212ENST00000528930 TRIOBPQ9H2D6 2365 aa11.69□□□□□ -0.54
SSBP3-212ENST00000528930 FBLN1P23142 703 aa11.69□□□□□ -0.54
SSBP3-212ENST00000528930 COG3Q96JB2 828 aa11.69□□□□□ -0.54
SSBP3-212ENST00000528930 DDX21Q9NR30 783 aaKnown RBP eCLIP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms