RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PLIN1O60240 522 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 TPM3P06753 285 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 RAD51AP2Q09MP3 1159 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 FLIIQ13045 1269 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 TRDNQ13061 729 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 C20orf194Q5TEA3 1177 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 LYPD8Q6UX82 237 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 RPAINQ86UA6 219 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 CABLES1Q8TDN4 633 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 ZBTB9Q96C00 473 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 PSMD1Q99460 953 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 ZBTB3Q9H5J0 574 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 CWC15Q9P013 229 aaKnown RBP7.02□□□□□ -1.29
CD44-225ENST00000527326 DDX49Q9Y6V7 483 aaKnown RBP7.02□□□□□ -1.29
CD44-225ENST00000527326 FMN1Q68DA7 1419 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 YEATS2Q9ULM3 1422 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 FGD5Q6ZNL6 1462 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 PRXQ9BXM0 1461 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 ZNF853P0CG23 659 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 CYP2C19P33261 490 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 TDO2P48775 406 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 ZKSCAN8Q15776 578 aaPredicted RBP7.01□□□□□ -1.29
CD44-225ENST00000527326 NOM1Q5C9Z4 860 aaKnown RBP7.01□□□□□ -1.29
CD44-225ENST00000527326 NBPF6Q5VWK0 638 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 NBPF5PQ86XG9 351 aaPredicted RBP7.01□□□□□ -1.29
CD44-225ENST00000527326 TXLNBQ8N3L3 684 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 ZNF511Q8NB15 262 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 TRIM47Q96LD4 638 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 NBPF4Q96M43 638 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 RBSNQ9H1K0 784 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 SH3BP1Q9Y3L3 701 aa7.01□□□□□ -1.29
CD44-225ENST00000527326 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.01□□□□□ -1.29
CD44-225ENST00000527326 GAPVD1Q14C86 1478 aa7□□□□□ -1.29
CD44-225ENST00000527326 ARHGAP35Q9NRY4 1499 aa7□□□□□ -1.29
CD44-225ENST00000527326 PLEKHH1Q9ULM0 1364 aa7□□□□□ -1.29
CD44-225ENST00000527326 CAPN5O15484 640 aaPredicted RBP7□□□□□ -1.29
CD44-225ENST00000527326 WFS1O76024 890 aa7□□□□□ -1.29
CD44-225ENST00000527326 ZSCAN23Q3MJ62 389 aa7□□□□□ -1.29
CD44-225ENST00000527326 PRPF38BQ5VTL8 546 aaKnown RBP7□□□□□ -1.29
CD44-225ENST00000527326 LRSAM1Q6UWE0 723 aa7□□□□□ -1.29
CD44-225ENST00000527326 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7□□□□□ -1.29
CD44-225ENST00000527326 KIF18AQ8NI77 898 aa7□□□□□ -1.29
CD44-225ENST00000527326 PUS7Q96PZ0 661 aaKnown RBP7□□□□□ -1.29
CD44-225ENST00000527326 C22orf23Q9BZE7 217 aa7□□□□□ -1.29
CD44-225ENST00000527326 TERF2IPQ9NYB0 399 aa7□□□□□ -1.29
CD44-225ENST00000527326 FAM53CQ9NYF3 392 aa7□□□□□ -1.29
CD44-225ENST00000527326 CGNL1Q0VF96 1302 aa7□□□□□ -1.29
CD44-225ENST00000527326 ANKRD30AQ9BXX3 1397 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 A0A1B0GUL7 405 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 ERICH4A6NGS2 130 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 NUTM2BA6NNL0 878 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 NUTM2EB1AL46 878 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 PPP1R12AO14974 1030 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 VARSP26640 1264 aaKnown RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 HNRNPH2P55795 449 aaKnown RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 SEMA3FQ13275 785 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 OS9Q13438 667 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 FAM50AQ14320 339 aaKnown RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 UVSSAQ2YD98 709 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 NUTM2DQ5VT03 806 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 NUTM2AQ8IVF1 878 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 ZNF397Q8NF99 534 aaPredicted RBP6.99□□□□□ -1.29
CD44-225ENST00000527326 TSC1Q92574 1164 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 KIFC2Q96AC6 838 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 CLUAP1Q96AJ1 413 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 DEF6Q9H4E7 631 aa6.99□□□□□ -1.29
CD44-225ENST00000527326 RAD54L2Q9Y4B4 1467 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 TDRD9Q8NDG6 1382 aaKnown RBP6.98□□□□□ -1.29
CD44-225ENST00000527326 LIG1P18858 919 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 NCBP1Q09161 790 aaKnown RBP6.98□□□□□ -1.29
CD44-225ENST00000527326 RABEP1Q15276 862 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 TEX35Q5T0J7 233 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 LCE2AQ5TA79 106 aaPredicted RBP6.98□□□□□ -1.29
CD44-225ENST00000527326 RNF20Q5VTR2 975 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 MYSM1Q5VVJ2 828 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 NLRP13Q86W25 1043 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 PMFBP1Q8TBY8 1022 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 NOL10Q9BSC4 688 aaKnown RBP6.98□□□□□ -1.29
CD44-225ENST00000527326 CXorf56Q9H5V9 222 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 MAP10Q9P2G4 905 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 LIMD1Q9UGP4 676 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 JRKLQ9Y4A0 524 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 TLL2Q9Y6L7 1015 aa6.98□□□□□ -1.29
CD44-225ENST00000527326 CUX1P39880 1505 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 CCDC196A0A1B0GTZ2 297 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 SMTNL1A8MU46 457 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 BMP1P13497 986 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 ATP2B1P20020 1258 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 GSCP56915 257 aaPredicted RBP6.97□□□□□ -1.29
CD44-225ENST00000527326 MLECQ14165 292 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 QPCTQ16769 361 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 SLFNL1Q499Z3 407 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 LRCH2Q5VUJ6 765 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 CASC1Q6TDU7 716 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 EP400NLQ6ZTU2 488 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 SUGP1Q8IWZ8 645 aaKnown RBP6.97□□□□□ -1.29
CD44-225ENST00000527326 OTUD6BQ8N6M0 293 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 GPATCH11Q8N954 259 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 FAM184AQ8NB25 1140 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 FAM174AQ8TBP5 190 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms