RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PLEKHF1Q96S99 279 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 SETDB2Q96T68 719 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 BRIP1Q9BX63 1249 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 RRAGCQ9HB90 399 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 PDZRN3Q9UPQ7 1066 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 NFKBIEO00221 500 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 PIP4K2AP48426 406 aaPredicted RBP13.33□□□□□ -0.28
VPS28-204ENST00000526054 PRELPP51888 382 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 ST5P78524 1137 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 CCDC184Q52MB2 194 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 IFFO2Q5TF58 517 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 ADAMTS8Q9UP79 889 aa13.33□□□□□ -0.28
VPS28-204ENST00000526054 KDM3BQ7LBC6 1761 aa13.32□□□□□ -0.28
VPS28-204ENST00000526054 PRAMEF22A3QJZ6 481 aa13.32□□□□□ -0.28
VPS28-204ENST00000526054 SNRPA1P09661 255 aaKnown RBP13.32□□□□□ -0.28
VPS28-204ENST00000526054 RUNDC1Q96C34 613 aa13.32□□□□□ -0.28
VPS28-204ENST00000526054 USP16Q9Y5T5 823 aa13.32□□□□□ -0.28
VPS28-204ENST00000526054 SLX4Q8IY92 1834 aa13.32□□□□□ -0.28
VPS28-204ENST00000526054 GLTPD2A6NH11 291 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 C21orf2O43822 256 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 DCTN1Q14203 1278 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 NFE2L2Q16236 605 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 SMC1BQ8NDV3 1235 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 ZNF219Q9P2Y4 722 aaPredicted RBP13.31□□□□□ -0.28
VPS28-204ENST00000526054 ZNF652Q9Y2D9 606 aa13.31□□□□□ -0.28
VPS28-204ENST00000526054 HTATSF1O43719 755 aaKnown RBP13.3□□□□□ -0.28
VPS28-204ENST00000526054 DNAJC5GQ8N7S2 189 aa13.3□□□□□ -0.28
VPS28-204ENST00000526054 PNISRQ8TF01 805 aaKnown RBP13.3□□□□□ -0.28
VPS28-204ENST00000526054 PCNTO95613 3336 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 VEGFAP15692 232 aaPredicted RBP13.29□□□□□ -0.28
VPS28-204ENST00000526054 HTRA3P83110 453 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 STYK1Q6J9G0 422 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 PRPF40BQ6NWY9 871 aaKnown RBP13.29□□□□□ -0.28
VPS28-204ENST00000526054 CLEC4GQ6UXB4 293 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 NBPF5PQ86XG9 351 aaPredicted RBP13.29□□□□□ -0.28
VPS28-204ENST00000526054 CNKSR1Q969H4 720 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 TAOK3Q9H2K8 898 aa13.29□□□□□ -0.28
VPS28-204ENST00000526054 CCER2I3L3R5 266 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 SRGNP10124 158 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 LMOD3Q0VAK6 560 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 ERFEQ4G0M1 354 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 MASTLQ96GX5 879 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 LTBP3Q9NS15 1303 aa13.28□□□□□ -0.28
VPS28-204ENST00000526054 NBPF26B4DH59 902 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 TMPOP42166 694 aaKnown RBP13.27□□□□□ -0.29
VPS28-204ENST00000526054 RIPK4P57078 832 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 TAF7Q15545 349 aaPredicted RBP13.27□□□□□ -0.29
VPS28-204ENST00000526054 SOGA3Q5TF21 947 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 DPY19L2Q6NUT2 758 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 NBPF10Q6P3W6 841 aaKnown RBP13.27□□□□□ -0.29
VPS28-204ENST00000526054 NBPF15Q8N660 670 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 KLRG1Q96E93 195 aa13.27□□□□□ -0.29
VPS28-204ENST00000526054 NIP7Q9Y221 180 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS28-204ENST00000526054 RGL2O15211 777 aa13.26□□□□□ -0.29
VPS28-204ENST00000526054 NUP98P52948 1817 aa13.26□□□□□ -0.29
VPS28-204ENST00000526054 FAM9BQ8IZU0 186 aa13.25□□□□□ -0.29
VPS28-204ENST00000526054 MIS18AQ9NYP9 233 aa13.25□□□□□ -0.29
VPS28-204ENST00000526054 RRP7AQ9Y3A4 280 aaKnown RBP13.25□□□□□ -0.29
VPS28-204ENST00000526054 FAM177BA6PVY3 158 aa13.24□□□□□ -0.29
VPS28-204ENST00000526054 NPR1P16066 1061 aa13.24□□□□□ -0.29
VPS28-204ENST00000526054 NEUROD2Q15784 382 aa13.24□□□□□ -0.29
VPS28-204ENST00000526054 CCDC93Q567U6 631 aa13.24□□□□□ -0.29
VPS28-204ENST00000526054 TPTE2Q6XPS3 522 aa13.24□□□□□ -0.29
VPS28-204ENST00000526054 APAF1O14727 1248 aa13.23□□□□□ -0.29
VPS28-204ENST00000526054 HLFQ16534 295 aa13.23□□□□□ -0.29
VPS28-204ENST00000526054 JMYQ8N9B5 988 aa13.23□□□□□ -0.29
VPS28-204ENST00000526054 SCN4AP35499 1836 aa13.23□□□□□ -0.29
VPS28-204ENST00000526054 POTECB2RU33 542 aa13.22□□□□□ -0.29
VPS28-204ENST00000526054 GTF2E1P29083 439 aaPredicted RBP13.22□□□□□ -0.29
VPS28-204ENST00000526054 KIF6Q6ZMV9 814 aa13.22□□□□□ -0.29
VPS28-204ENST00000526054 MIER1Q8N108 512 aa13.22□□□□□ -0.29
VPS28-204ENST00000526054 NGEFQ8N5V2 710 aa13.22□□□□□ -0.29
VPS28-204ENST00000526054 THUMPD2Q9BTF0 503 aaKnown RBP13.22□□□□□ -0.29
VPS28-204ENST00000526054 ABCC12Q96J65 1359 aa13.21□□□□□ -0.29
VPS28-204ENST00000526054 KLRG2A4D1S0 409 aaPredicted RBP13.21□□□□□ -0.29
VPS28-204ENST00000526054 DDNO94850 711 aaPredicted RBP13.21□□□□□ -0.29
VPS28-204ENST00000526054 EIF4A1P60842 406 aaKnown RBP13.21□□□□□ -0.29
VPS28-204ENST00000526054 C7orf43Q8WVR3 580 aa13.21□□□□□ -0.29
VPS28-204ENST00000526054 MAP3K15Q6ZN16 1313 aa13.2□□□□□ -0.3
VPS28-204ENST00000526054 MYL6BP14649 208 aa13.2□□□□□ -0.3
VPS28-204ENST00000526054 FKBP4Q02790 459 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS28-204ENST00000526054 NYXQ9GZU5 481 aa13.2□□□□□ -0.3
VPS28-204ENST00000526054 TRIM35Q9UPQ4 493 aa13.2□□□□□ -0.3
VPS28-204ENST00000526054 RIC1Q4ADV7 1423 aa13.2□□□□□ -0.3
VPS28-204ENST00000526054 IBTKQ9P2D0 1353 aaPredicted RBP13.2□□□□□ -0.3
VPS28-204ENST00000526054 IQCA1LA6NCM1 817 aa13.19□□□□□ -0.3
VPS28-204ENST00000526054 ERVV-1B6SEH8 477 aa13.19□□□□□ -0.3
VPS28-204ENST00000526054 CALD1Q05682 793 aaKnown RBP13.19□□□□□ -0.3
VPS28-204ENST00000526054 CHADLQ6NUI6 762 aa13.19□□□□□ -0.3
VPS28-204ENST00000526054 OLFM4Q6UX06 510 aa13.19□□□□□ -0.3
VPS28-204ENST00000526054 NUTM1Q86Y26 1132 aa13.19□□□□□ -0.3
VPS28-204ENST00000526054 ZNF277Q9NRM2 450 aaPredicted RBP13.19□□□□□ -0.3
VPS28-204ENST00000526054 ERBB4Q15303 1308 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 ANKRD36CQ5JPF3 1778 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 GPTP24298 496 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 ALDH1B1P30837 517 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 NCBP3Q53F19 620 aaKnown RBP13.18□□□□□ -0.3
VPS28-204ENST00000526054 TTLL7Q6ZT98 887 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 RTKN2Q8IZC4 609 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms