RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 BCL2L12Q9HB09 334 aa26.65■■□□□ 1.86
CD44-222ENST00000526025 ZNF652Q9Y2D9 606 aa26.65■■□□□ 1.86
CD44-222ENST00000526025 ANKRD36CQ5JPF3 1778 aa26.64■■□□□ 1.86
CD44-222ENST00000526025 TTLL7Q6ZT98 887 aa26.63■■□□□ 1.85
CD44-222ENST00000526025 COPS6Q7L5N1 327 aa26.63■■□□□ 1.85
CD44-222ENST00000526025 XAGE3Q8WTP9 111 aa26.63■■□□□ 1.85
CD44-222ENST00000526025 ARFGEF2Q9Y6D5 1785 aa26.63■■□□□ 1.85
CD44-222ENST00000526025 PTGER2P43116 358 aa26.62■■□□□ 1.85
CD44-222ENST00000526025 FKBP8Q14318 412 aa26.62■■□□□ 1.85
CD44-222ENST00000526025 ALDH1L2Q3SY69 923 aa26.62■■□□□ 1.85
CD44-222ENST00000526025 SLC4A2P04920 1241 aa26.61■■□□□ 1.85
CD44-222ENST00000526025 POLD1P28340 1107 aa26.61■■□□□ 1.85
CD44-222ENST00000526025 ARXQ96QS3 562 aa26.61■■□□□ 1.85
CD44-222ENST00000526025 ATF5Q9Y2D1 282 aaPredicted RBP26.61■■□□□ 1.85
CD44-222ENST00000526025 ATP10DQ9P241 1426 aa26.61■■□□□ 1.85
CD44-222ENST00000526025 NRXN2Q9P2S2 1712 aa26.59■■□□□ 1.85
CD44-222ENST00000526025 TM4SF1P30408 202 aa26.59■■□□□ 1.85
CD44-222ENST00000526025 MSL1Q68DK7 614 aa26.59■■□□□ 1.85
CD44-222ENST00000526025 PLBD2Q8NHP8 589 aa26.59■■□□□ 1.85
CD44-222ENST00000526025 GIGYF2Q6Y7W6 1299 aaKnown RBP26.58■■□□□ 1.85
CD44-222ENST00000526025 PHAXQ9H814 394 aaKnown RBP26.58■■□□□ 1.85
CD44-222ENST00000526025 AFDNP55196 1824 aaKnown RBP26.58■■□□□ 1.84
CD44-222ENST00000526025 DDX58O95786 925 aaKnown RBP26.57■■□□□ 1.84
CD44-222ENST00000526025 AIMP1Q12904 312 aaKnown RBP26.57■■□□□ 1.84
CD44-222ENST00000526025 ANKRD13DQ6ZTN6 518 aa26.57■■□□□ 1.84
CD44-222ENST00000526025 MMP10P09238 476 aa26.56■■□□□ 1.84
CD44-222ENST00000526025 BRPF1P55201 1214 aaPredicted RBP26.56■■□□□ 1.84
CD44-222ENST00000526025 NFIXQ14938 502 aa26.56■■□□□ 1.84
CD44-222ENST00000526025 HSP90AB3PQ58FF7 597 aa26.56■■□□□ 1.84
CD44-222ENST00000526025 ZBTB3Q9H5J0 574 aa26.56■■□□□ 1.84
CD44-222ENST00000526025 TCERG1O14776 1098 aaKnown RBP26.55■■□□□ 1.84
CD44-222ENST00000526025 FLIIQ13045 1269 aa26.55■■□□□ 1.84
CD44-222ENST00000526025 HLFQ16534 295 aa26.55■■□□□ 1.84
CD44-222ENST00000526025 SSH1Q8WYL5 1049 aa26.55■■□□□ 1.84
CD44-222ENST00000526025 KIF13BQ9NQT8 1826 aa26.55■■□□□ 1.84
CD44-222ENST00000526025 CARMIL3Q8ND23 1372 aa26.55■■□□□ 1.84
CD44-222ENST00000526025 TBC1D9BQ66K14 1250 aa26.54■■□□□ 1.84
CD44-222ENST00000526025 MRPL50Q8N5N7 158 aaKnown RBP26.54■■□□□ 1.84
CD44-222ENST00000526025 POLRMTO00411 1230 aaKnown RBP26.53■■□□□ 1.84
CD44-222ENST00000526025 G2E3Q7L622 706 aa26.53■■□□□ 1.84
CD44-222ENST00000526025 YTHDC1Q96MU7 727 aaKnown RBP26.53■■□□□ 1.84
CD44-222ENST00000526025 SETDB2Q96T68 719 aa26.53■■□□□ 1.84
CD44-222ENST00000526025 PARP3Q9Y6F1 533 aa26.53■■□□□ 1.84
CD44-222ENST00000526025 RARSP54136 660 aaKnown RBP26.52■■□□□ 1.84
CD44-222ENST00000526025 DDR1Q08345 913 aa26.52■■□□□ 1.84
CD44-222ENST00000526025 KSR2Q6VAB6 950 aa26.52■■□□□ 1.84
CD44-222ENST00000526025 ZNF34Q8IZ26 560 aa26.52■■□□□ 1.84
CD44-222ENST00000526025 IBTKQ9P2D0 1353 aaPredicted RBP26.52■■□□□ 1.84
CD44-222ENST00000526025 ADCY9O60503 1353 aa26.5■■□□□ 1.83
CD44-222ENST00000526025 PTPRCP08575 1304 aa26.5■■□□□ 1.83
CD44-222ENST00000526025 TCIRG1Q13488 830 aa26.5■■□□□ 1.83
CD44-222ENST00000526025 RIC3Q7Z5B4 369 aa26.5■■□□□ 1.83
CD44-222ENST00000526025 SMC4Q9NTJ3 1288 aa26.5■■□□□ 1.83
CD44-222ENST00000526025 NIP7Q9Y221 180 aaKnown RBP eCLIP26.5■■□□□ 1.83
CD44-222ENST00000526025 FKBP5Q13451 457 aaPredicted RBP26.49■■□□□ 1.83
CD44-222ENST00000526025 PARP10Q53GL7 1025 aa26.49■■□□□ 1.83
CD44-222ENST00000526025 PI4KAP2A4QPH2 592 aa26.48■■□□□ 1.83
CD44-222ENST00000526025 TRIM28Q13263 835 aaKnown RBP26.48■■□□□ 1.83
CD44-222ENST00000526025 PI4KAP1Q8N8J0 262 aa26.48■■□□□ 1.83
CD44-222ENST00000526025 C10orf71Q711Q0 1435 aa26.48■■□□□ 1.83
CD44-222ENST00000526025 BICDL1Q6ZP65 573 aa26.47■■□□□ 1.83
CD44-222ENST00000526025 ISCA1Q9BUE6 129 aa26.47■■□□□ 1.83
CD44-222ENST00000526025 METTL22Q9BUU2 404 aaPredicted RBP26.47■■□□□ 1.83
CD44-222ENST00000526025 N4BP2Q86UW6 1770 aaPredicted RBP26.46■■□□□ 1.83
CD44-222ENST00000526025 KIF16BQ96L93 1317 aa26.46■■□□□ 1.83
CD44-222ENST00000526025 SERPINB2P05120 415 aa26.46■■□□□ 1.83
CD44-222ENST00000526025 MAP3K2Q9Y2U5 619 aa26.46■■□□□ 1.83
CD44-222ENST00000526025 RNF123Q5XPI4 1314 aa26.45■■□□□ 1.83
CD44-222ENST00000526025 UBN2Q6ZU65 1347 aa26.45■■□□□ 1.83
CD44-222ENST00000526025 NYXQ9GZU5 481 aa26.45■■□□□ 1.82
CD44-222ENST00000526025 DNAAF4Q8WXU2 420 aa26.44■■□□□ 1.82
CD44-222ENST00000526025 BCL2L13Q9BXK5 485 aa26.44■■□□□ 1.82
CD44-222ENST00000526025 PPP1R1BQ9UD71 204 aaPredicted RBP26.44■■□□□ 1.82
CD44-222ENST00000526025 CD2APQ9Y5K6 639 aa26.44■■□□□ 1.82
CD44-222ENST00000526025 PXDNLA1KZ92 1463 aa26.43■■□□□ 1.82
CD44-222ENST00000526025 TPTE2Q6XPS3 522 aa26.43■■□□□ 1.82
CD44-222ENST00000526025 PPP1R42Q7Z4L9 355 aa26.43■■□□□ 1.82
CD44-222ENST00000526025 NLRP10Q86W26 655 aa26.43■■□□□ 1.82
CD44-222ENST00000526025 ARHGAP45Q92619 1136 aa26.43■■□□□ 1.82
CD44-222ENST00000526025 ANKRD31Q8N7Z5 1873 aa26.42■■□□□ 1.82
CD44-222ENST00000526025 GPTP24298 496 aa26.42■■□□□ 1.82
CD44-222ENST00000526025 NEXNQ0ZGT2 675 aa26.42■■□□□ 1.82
CD44-222ENST00000526025 NBPF5PQ86XG9 351 aaPredicted RBP26.42■■□□□ 1.82
CD44-222ENST00000526025 CNBD1Q8NA66 436 aa26.42■■□□□ 1.82
CD44-222ENST00000526025 RIC1Q4ADV7 1423 aa26.41■■□□□ 1.82
CD44-222ENST00000526025 CCDC191Q8NCU4 936 aa26.41■■□□□ 1.82
CD44-222ENST00000526025 KIAA1551Q9HCM1 1747 aa26.4■■□□□ 1.82
CD44-222ENST00000526025 PRR5LQ6MZQ0 368 aa26.4■■□□□ 1.82
CD44-222ENST00000526025 MYD88Q99836 296 aa26.4■■□□□ 1.82
CD44-222ENST00000526025 LAMB2P55268 1798 aa26.39■■□□□ 1.82
CD44-222ENST00000526025 NTSR2O95665 410 aa26.39■■□□□ 1.82
CD44-222ENST00000526025 SUSD4Q5VX71 490 aa26.39■■□□□ 1.82
CD44-222ENST00000526025 LINS1Q8NG48 757 aa26.39■■□□□ 1.82
CD44-222ENST00000526025 UTP14AQ9BVJ6 771 aaKnown RBP26.39■■□□□ 1.82
CD44-222ENST00000526025 SRCAPQ6ZRS2 3230 aa26.38■■□□□ 1.81
CD44-222ENST00000526025 IPO8O15397 1037 aaKnown RBP26.38■■□□□ 1.81
CD44-222ENST00000526025 ST5P78524 1137 aa26.38■■□□□ 1.81
CD44-222ENST00000526025 API5Q9BZZ5 524 aaKnown RBP26.38■■□□□ 1.81
CD44-222ENST00000526025 NOB1Q9ULX3 412 aaKnown RBP26.38■■□□□ 1.81
CD44-222ENST00000526025 DLEC1Q9Y238 1755 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms