RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 FSTL1Q12841 308 aa21.62■■□□□ 1.05
HIF3A-208ENST00000524533 ZNF652Q9Y2D9 606 aa21.62■■□□□ 1.05
HIF3A-208ENST00000524533 DICER1Q9UPY3 1922 aaKnown RBP21.61■■□□□ 1.05
HIF3A-208ENST00000524533 ZNF219Q9P2Y4 722 aaPredicted RBP21.61■■□□□ 1.05
HIF3A-208ENST00000524533 C21orf2O43822 256 aa21.6■■□□□ 1.05
HIF3A-208ENST00000524533 CLEC4GQ6UXB4 293 aa21.6■■□□□ 1.05
HIF3A-208ENST00000524533 SLX4Q8IY92 1834 aa21.59■■□□□ 1.05
HIF3A-208ENST00000524533 GLTPD2A6NH11 291 aa21.59■■□□□ 1.05
HIF3A-208ENST00000524533 TAF7Q15545 349 aaPredicted RBP21.59■■□□□ 1.05
HIF3A-208ENST00000524533 NBPF5PQ86XG9 351 aaPredicted RBP21.59■■□□□ 1.05
HIF3A-208ENST00000524533 NBPF26B4DH59 902 aa21.58■■□□□ 1.05
HIF3A-208ENST00000524533 STYK1Q6J9G0 422 aa21.58■■□□□ 1.05
HIF3A-208ENST00000524533 NBPF10Q6P3W6 841 aaKnown RBP21.58■■□□□ 1.05
HIF3A-208ENST00000524533 NBPF15Q8N660 670 aa21.58■■□□□ 1.05
HIF3A-208ENST00000524533 CNKSR1Q969H4 720 aa21.58■■□□□ 1.05
HIF3A-208ENST00000524533 SRGNP10124 158 aa21.57■■□□□ 1.04
HIF3A-208ENST00000524533 SMC1BQ8NDV3 1235 aa21.57■■□□□ 1.04
HIF3A-208ENST00000524533 PRPF40BQ6NWY9 871 aaKnown RBP21.56■■□□□ 1.04
HIF3A-208ENST00000524533 DNAJC5GQ8N7S2 189 aa21.56■■□□□ 1.04
HIF3A-208ENST00000524533 MASTLQ96GX5 879 aa21.56■■□□□ 1.04
HIF3A-208ENST00000524533 MIS18AQ9NYP9 233 aa21.56■■□□□ 1.04
HIF3A-208ENST00000524533 LTBP3Q9NS15 1303 aa21.55■■□□□ 1.04
HIF3A-208ENST00000524533 RGL2O15211 777 aa21.55■■□□□ 1.04
HIF3A-208ENST00000524533 VEGFAP15692 232 aaPredicted RBP21.55■■□□□ 1.04
HIF3A-208ENST00000524533 PNISRQ8TF01 805 aaKnown RBP21.55■■□□□ 1.04
HIF3A-208ENST00000524533 TAOK3Q9H2K8 898 aa21.55■■□□□ 1.04
HIF3A-208ENST00000524533 NIP7Q9Y221 180 aaKnown RBP eCLIP21.55■■□□□ 1.04
HIF3A-208ENST00000524533 ERFEQ4G0M1 354 aa21.54■■□□□ 1.04
HIF3A-208ENST00000524533 SOGA3Q5TF21 947 aa21.54■■□□□ 1.04
HIF3A-208ENST00000524533 IFFO2Q5TF58 517 aa21.54■■□□□ 1.04
HIF3A-208ENST00000524533 PLEKHF1Q96S99 279 aa21.54■■□□□ 1.04
HIF3A-208ENST00000524533 MAPK8IP3Q9UPT6 1336 aa21.54■■□□□ 1.04
HIF3A-208ENST00000524533 HTRA3P83110 453 aa21.53■■□□□ 1.04
HIF3A-208ENST00000524533 NFE2L2Q16236 605 aa21.53■■□□□ 1.04
HIF3A-208ENST00000524533 DPY19L2Q6NUT2 758 aa21.52■■□□□ 1.04
HIF3A-208ENST00000524533 TPTE2Q6XPS3 522 aa21.52■■□□□ 1.04
HIF3A-208ENST00000524533 NUP98P52948 1817 aa21.51■■□□□ 1.03
HIF3A-208ENST00000524533 FAM177BA6PVY3 158 aa21.51■■□□□ 1.03
HIF3A-208ENST00000524533 PNNQ9H307 717 aaKnown RBP21.51■■□□□ 1.03
HIF3A-208ENST00000524533 NPR1P16066 1061 aa21.5■■□□□ 1.03
HIF3A-208ENST00000524533 HLFQ16534 295 aa21.5■■□□□ 1.03
HIF3A-208ENST00000524533 KLRG1Q96E93 195 aa21.5■■□□□ 1.03
HIF3A-208ENST00000524533 THUMPD2Q9BTF0 503 aaKnown RBP21.5■■□□□ 1.03
HIF3A-208ENST00000524533 EIF4A1P60842 406 aaKnown RBP21.49■■□□□ 1.03
HIF3A-208ENST00000524533 CCDC93Q567U6 631 aa21.49■■□□□ 1.03
HIF3A-208ENST00000524533 KLRG2A4D1S0 409 aaPredicted RBP21.48■■□□□ 1.03
HIF3A-208ENST00000524533 NGEFQ8N5V2 710 aa21.48■■□□□ 1.03
HIF3A-208ENST00000524533 POTECB2RU33 542 aa21.47■■□□□ 1.03
HIF3A-208ENST00000524533 GTF2E1P29083 439 aaPredicted RBP21.47■■□□□ 1.03
HIF3A-208ENST00000524533 KIF6Q6ZMV9 814 aa21.47■■□□□ 1.03
HIF3A-208ENST00000524533 RRP7AQ9Y3A4 280 aaKnown RBP21.47■■□□□ 1.03
HIF3A-208ENST00000524533 C7orf43Q8WVR3 580 aa21.46■■□□□ 1.03
HIF3A-208ENST00000524533 MAP3K15Q6ZN16 1313 aa21.46■■□□□ 1.03
HIF3A-208ENST00000524533 ERVV-1B6SEH8 477 aa21.45■■□□□ 1.02
HIF3A-208ENST00000524533 MYL6BP14649 208 aa21.45■■□□□ 1.02
HIF3A-208ENST00000524533 NYXQ9GZU5 481 aa21.45■■□□□ 1.02
HIF3A-208ENST00000524533 ABCC12Q96J65 1359 aa21.45■■□□□ 1.02
HIF3A-208ENST00000524533 FKBP4Q02790 459 aaKnown RBP eCLIP21.44■■□□□ 1.02
HIF3A-208ENST00000524533 DDNO94850 711 aaPredicted RBP21.43■■□□□ 1.02
HIF3A-208ENST00000524533 RALBP1Q15311 655 aa21.43■■□□□ 1.02
HIF3A-208ENST00000524533 TTLL7Q6ZT98 887 aa21.43■■□□□ 1.02
HIF3A-208ENST00000524533 JMYQ8N9B5 988 aa21.43■■□□□ 1.02
HIF3A-208ENST00000524533 ZBTB3Q9H5J0 574 aa21.43■■□□□ 1.02
HIF3A-208ENST00000524533 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
HIF3A-208ENST00000524533 IBTKQ9P2D0 1353 aaPredicted RBP21.43■■□□□ 1.02
HIF3A-208ENST00000524533 ALDH1B1P30837 517 aa21.42■■□□□ 1.02
HIF3A-208ENST00000524533 SCN4AP35499 1836 aa21.42■■□□□ 1.02
HIF3A-208ENST00000524533 ERBB4Q15303 1308 aa21.42■■□□□ 1.02
HIF3A-208ENST00000524533 RIC1Q4ADV7 1423 aa21.42■■□□□ 1.02
HIF3A-208ENST00000524533 NUTM1Q86Y26 1132 aa21.42■■□□□ 1.02
HIF3A-208ENST00000524533 OLFM4Q6UX06 510 aa21.41■■□□□ 1.02
HIF3A-208ENST00000524533 RTKN2Q8IZC4 609 aa21.41■■□□□ 1.02
HIF3A-208ENST00000524533 UBN2Q6ZU65 1347 aa21.4■■□□□ 1.02
HIF3A-208ENST00000524533 GPTP24298 496 aa21.4■■□□□ 1.02
HIF3A-208ENST00000524533 RIPK4P57078 832 aa21.4■■□□□ 1.02
HIF3A-208ENST00000524533 CRY2Q49AN0 593 aa21.4■■□□□ 1.02
HIF3A-208ENST00000524533 ZNF277Q9NRM2 450 aaPredicted RBP21.4■■□□□ 1.02
HIF3A-208ENST00000524533 IQCA1LA6NCM1 817 aa21.38■■□□□ 1.01
HIF3A-208ENST00000524533 LMOD3Q0VAK6 560 aa21.38■■□□□ 1.01
HIF3A-208ENST00000524533 CHADLQ6NUI6 762 aa21.38■■□□□ 1.01
HIF3A-208ENST00000524533 RPGRQ92834 1020 aaKnown RBP21.38■■□□□ 1.01
HIF3A-208ENST00000524533 L3MBTL3Q96JM7 780 aaPredicted RBP21.38■■□□□ 1.01
HIF3A-208ENST00000524533 ANKRD36CQ5JPF3 1778 aa21.38■■□□□ 1.01
HIF3A-208ENST00000524533 SNED1Q8TER0 1413 aa21.38■■□□□ 1.01
HIF3A-208ENST00000524533 ZNF541Q9H0D2 1346 aa21.37■■□□□ 1.01
HIF3A-208ENST00000524533 POTEIP0CG38 1075 aa21.37■■□□□ 1.01
HIF3A-208ENST00000524533 POTEJP0CG39 1038 aa21.37■■□□□ 1.01
HIF3A-208ENST00000524533 GIGYF2Q6Y7W6 1299 aaKnown RBP21.37■■□□□ 1.01
HIF3A-208ENST00000524533 MYBBP1AQ9BQG0 1328 aaKnown RBP21.36■■□□□ 1.01
HIF3A-208ENST00000524533 IARSP41252 1262 aaKnown RBP21.36■■□□□ 1.01
HIF3A-208ENST00000524533 TMPOP42166 694 aaKnown RBP21.36■■□□□ 1.01
HIF3A-208ENST00000524533 SUSD4Q5VX71 490 aa21.36■■□□□ 1.01
HIF3A-208ENST00000524533 ZNF34Q8IZ26 560 aa21.36■■□□□ 1.01
HIF3A-208ENST00000524533 BABAM1Q9NWV8 329 aa21.36■■□□□ 1.01
HIF3A-208ENST00000524533 NTSR2O95665 410 aa21.35■■□□□ 1.01
HIF3A-208ENST00000524533 EIF2S2P20042 333 aaKnown RBP21.35■■□□□ 1.01
HIF3A-208ENST00000524533 SYNE4Q8N205 404 aa21.35■■□□□ 1.01
HIF3A-208ENST00000524533 CC2D2BQ6DHV5 1058 aa21.34■■□□□ 1.01
HIF3A-208ENST00000524533 PPP1R42Q7Z4L9 355 aa21.34■■□□□ 1.01
HIF3A-208ENST00000524533 PSMD1Q99460 953 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms