RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 U2AF2P26368 475 aaKnown RBP eCLIP8.79□□□□□ -1
HDAC9-227ENST00000523867 CHAF1AQ13111 956 aaPredicted RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 CASC1Q6TDU7 716 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 COG3Q96JB2 828 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 USP26Q9BXU7 913 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 KDM4CQ9H3R0 1056 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 ZRANB1Q9UGI0 708 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 MAP2P11137 1827 aaKnown RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 MED1Q15648 1581 aaPredicted RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 EDC4Q6P2E9 1401 aaKnown RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 ZNF335Q9H4Z2 1342 aaPredicted RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 RRS1Q15050 365 aaKnown RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 MCTP1Q6DN14 999 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 LRSAM1Q6UWE0 723 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 RPAP2Q8IXW5 612 aaPredicted RBP8.79□□□□□ -1
HDAC9-227ENST00000523867 ANKRD44Q8N8A2 993 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 CEP120Q8N960 986 aa8.79□□□□□ -1
HDAC9-227ENST00000523867 AATKQ6ZMQ8 1374 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 KIF4AO95239 1232 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 JARID2Q92833 1246 aaPredicted RBP8.78□□□□□ -1
HDAC9-227ENST00000523867 FEZ2Q9UHY8 353 aaPredicted RBP8.78□□□□□ -1
HDAC9-227ENST00000523867 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.78□□□□□ -1
HDAC9-227ENST00000523867 TTC36A6NLP5 189 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 WASLO00401 505 aaPredicted RBP8.78□□□□□ -1
HDAC9-227ENST00000523867 ST18O60284 1047 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 SEMA3FQ13275 785 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 NBPF11Q86T75 865 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 CTNNA3Q9UI47 895 aa8.78□□□□□ -1
HDAC9-227ENST00000523867 CPSF1Q10570 1443 aaKnown RBP8.77□□□□□ -1
HDAC9-227ENST00000523867 TNRQ92752 1358 aa8.77□□□□□ -1
HDAC9-227ENST00000523867 RAD50Q92878 1312 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 CEP85Q6P2H3 762 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 DLC1Q96QB1 1528 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 SDSP20132 328 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 PRIM1P49642 420 aaKnown RBP8.77□□□□□ -1.01
HDAC9-227ENST00000523867 DNAJC14Q6Y2X3 702 aaPredicted RBP8.77□□□□□ -1.01
HDAC9-227ENST00000523867 KRBA2Q6ZNG9 492 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 PROM2Q8N271 834 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 OTUD7AQ8TE49 926 aaPredicted RBP8.77□□□□□ -1.01
HDAC9-227ENST00000523867 BRMS1Q9HCU9 246 aa8.77□□□□□ -1.01
HDAC9-227ENST00000523867 UVSSAQ2YD98 709 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 CAVIN1Q6NZI2 390 aaKnown RBP8.76□□□□□ -1.01
HDAC9-227ENST00000523867 TSC1Q92574 1164 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 GPATCH3Q96I76 525 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 REC8O95072 547 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 CYP2E1P05181 493 aaPredicted RBP8.76□□□□□ -1.01
HDAC9-227ENST00000523867 RHBDL3P58872 404 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 KRT24Q2M2I5 525 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 THEMISQ8N1K5 641 aaPredicted RBP8.76□□□□□ -1.01
HDAC9-227ENST00000523867 NUDT16Q96DE0 195 aaKnown RBP8.76□□□□□ -1.01
HDAC9-227ENST00000523867 KNDC1Q76NI1 1749 aa8.76□□□□□ -1.01
HDAC9-227ENST00000523867 IRF6O14896 467 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 PKP1Q13835 747 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 KRT222Q8N1A0 295 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 MYCBPQ99417 103 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-227ENST00000523867 LMBRD1Q9NUN5 540 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 FAM53CQ9NYF3 392 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 ATP10DQ9P241 1426 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 CCDC61Q9Y6R9 512 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 PTPRCP08575 1304 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 CHL1O00533 1208 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 GTPBP6O43824 516 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-227ENST00000523867 TPM3P06753 285 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 TNNT3P45378 269 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-227ENST00000523867 SULT6B1Q6IMI4 303 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 ANKLE2Q86XL3 938 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 RTL1A6NKG5 1358 aa8.75□□□□□ -1.01
HDAC9-227ENST00000523867 ZMYND10O75800 440 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 NOP2P46087 812 aaKnown RBP8.74□□□□□ -1.01
HDAC9-227ENST00000523867 LONRF3Q496Y0 759 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 ZFYVE27Q5T4F4 411 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 TXNDC2Q86VQ3 553 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 ZGPATQ8N5A5 531 aaKnown RBP8.74□□□□□ -1.01
HDAC9-227ENST00000523867 MEIS3Q99687 375 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 MSH6P52701 1360 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 DLG5Q8TDM6 1919 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 NPHP4O75161 1426 aaPredicted RBP8.74□□□□□ -1.01
HDAC9-227ENST00000523867 ERC2O15083 957 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 HMMRO75330 724 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 PRPF40AO75400 957 aaKnown RBP8.74□□□□□ -1.01
HDAC9-227ENST00000523867 MCM10Q7L590 875 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 FAM184AQ8NB25 1140 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 NCAPGQ9BPX3 1015 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 CDCA7Q9BWT1 371 aaPredicted RBP8.74□□□□□ -1.01
HDAC9-227ENST00000523867 RGS12O14924 1447 aa8.74□□□□□ -1.01
HDAC9-227ENST00000523867 FAM177BA6PVY3 158 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 EIF4A2Q14240 407 aaKnown RBP8.73□□□□□ -1.01
HDAC9-227ENST00000523867 MAMSTRQ6ZN01 415 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 GET4Q7L5D6 327 aaPredicted RBP8.73□□□□□ -1.01
HDAC9-227ENST00000523867 CARD10Q9BWT7 1032 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 KIAA0232Q92628 1395 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 EGFL6Q8IUX8 553 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 AK9Q5TCS8 1911 aa8.73□□□□□ -1.01
HDAC9-227ENST00000523867 GTF2A1P52655 376 aaPredicted RBP8.72□□□□□ -1.01
HDAC9-227ENST00000523867 KIF18AQ8NI77 898 aa8.72□□□□□ -1.01
HDAC9-227ENST00000523867 DRC1Q96MC2 740 aa8.72□□□□□ -1.01
HDAC9-227ENST00000523867 RASSF4Q9H2L5 321 aa8.72□□□□□ -1.01
HDAC9-227ENST00000523867 ERBB3P21860 1342 aa8.72□□□□□ -1.01
HDAC9-227ENST00000523867 DHX16O60231 1041 aaKnown RBP8.72□□□□□ -1.01
HDAC9-227ENST00000523867 MBD3O95983 291 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms