RNA–Protein interactions for RNA: ENST00000518723.1

TRAPPC9-204, Transcript of trafficking protein particle complex 9, humanhuman

TSL 4

Gene TRAPPC9, Length 558 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-204ENST00000518723 A1BGP04217 495 aa16.69■□□□□ 0.26
TRAPPC9-204ENST00000518723 GAS2L2Q8NHY3 880 aa16.69■□□□□ 0.26
TRAPPC9-204ENST00000518723 FMNL2Q96PY5 1086 aa16.69■□□□□ 0.26
TRAPPC9-204ENST00000518723 ZNF330Q9Y3S2 320 aaPredicted RBP16.69■□□□□ 0.26
TRAPPC9-204ENST00000518723 SLX4Q8IY92 1834 aa16.68■□□□□ 0.26
TRAPPC9-204ENST00000518723 GNAT3A8MTJ3 354 aa16.68■□□□□ 0.26
TRAPPC9-204ENST00000518723 NPHP1O15259 732 aa16.68■□□□□ 0.26
TRAPPC9-204ENST00000518723 NPM2Q86SE8 214 aaKnown RBP16.68■□□□□ 0.26
TRAPPC9-204ENST00000518723 CEMIPQ8WUJ3 1361 aa16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 ARFGEF2Q9Y6D5 1785 aa16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 TMEM88BA6NKF7 163 aa16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 ITGBL1O95965 494 aaPredicted RBP16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 CTCFP49711 727 aaPredicted RBP16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 CCDC93Q567U6 631 aa16.67■□□□□ 0.26
TRAPPC9-204ENST00000518723 SCN4AP35499 1836 aa16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 VEGFBP49765 207 aa16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 CLEC4GQ6UXB4 293 aa16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 DZIP3Q86Y13 1208 aaKnown RBP16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 AIDAQ96BJ3 306 aa16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 SIPA1L3O60292 1781 aaPredicted RBP16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 COL3A1P02461 1466 aaPredicted RBP16.66■□□□□ 0.26
TRAPPC9-204ENST00000518723 KLRG2A4D1S0 409 aaPredicted RBP16.65■□□□□ 0.26
TRAPPC9-204ENST00000518723 PER1O15534 1290 aaPredicted RBP16.65■□□□□ 0.26
TRAPPC9-204ENST00000518723 NPR1P16066 1061 aa16.65■□□□□ 0.26
TRAPPC9-204ENST00000518723 FKBP4Q02790 459 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRAPPC9-204ENST00000518723 WBP1LQ9NX94 342 aa16.65■□□□□ 0.26
TRAPPC9-204ENST00000518723 BCORQ6W2J9 1755 aa16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 RGL2O15211 777 aa16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 NBPF5PQ86XG9 351 aaPredicted RBP16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 HACL1Q9UJ83 578 aa16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 KIF7Q2M1P5 1343 aa16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 ZNF541Q9H0D2 1346 aa16.64■□□□□ 0.25
TRAPPC9-204ENST00000518723 RTKN2Q8IZC4 609 aa16.63■□□□□ 0.25
TRAPPC9-204ENST00000518723 ZNF652Q9Y2D9 606 aa16.63■□□□□ 0.25
TRAPPC9-204ENST00000518723 ADAMTSL1Q8N6G6 1762 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 RASSF10A6NK89 507 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 BTBD11A6QL63 1104 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 KCNQ3O43525 872 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 EPHX2P34913 555 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 EAPPQ56P03 285 aaPredicted RBP16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 PNMA8AQ86V59 439 aaPredicted RBP16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 ZNF277Q9NRM2 450 aaPredicted RBP16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 USP16Q9Y5T5 823 aa16.62■□□□□ 0.25
TRAPPC9-204ENST00000518723 U2SURPO15042 1029 aaKnown RBP16.61■□□□□ 0.25
TRAPPC9-204ENST00000518723 CC2D1BQ5T0F9 858 aaKnown RBP16.61■□□□□ 0.25
TRAPPC9-204ENST00000518723 TPTE2Q6XPS3 522 aa16.61■□□□□ 0.25
TRAPPC9-204ENST00000518723 NPC1L1Q9UHC9 1359 aa16.61■□□□□ 0.25
TRAPPC9-204ENST00000518723 FZD9O00144 591 aa16.6■□□□□ 0.25
TRAPPC9-204ENST00000518723 LBX1P52954 281 aa16.6■□□□□ 0.25
TRAPPC9-204ENST00000518723 PCGF6Q9BYE7 350 aa16.6■□□□□ 0.25
TRAPPC9-204ENST00000518723 CACNA1SQ13698 1873 aa16.6■□□□□ 0.25
TRAPPC9-204ENST00000518723 IARSP41252 1262 aaKnown RBP16.59■□□□□ 0.25
TRAPPC9-204ENST00000518723 DEFB115Q30KQ5 88 aa16.59■□□□□ 0.25
TRAPPC9-204ENST00000518723 CNTROBQ8N137 903 aa16.59■□□□□ 0.25
TRAPPC9-204ENST00000518723 CLEC11AQ9Y240 323 aa16.59■□□□□ 0.25
TRAPPC9-204ENST00000518723 SNRPA1P09661 255 aaKnown RBP16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 HSPA8P11142 646 aaKnown RBP16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 PIP4K2AP48426 406 aaPredicted RBP16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 OLFM4Q6UX06 510 aa16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 GPC2Q8N158 579 aa16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 NIP7Q9Y221 180 aaKnown RBP eCLIP16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 RNF123Q5XPI4 1314 aa16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 SNED1Q8TER0 1413 aa16.58■□□□□ 0.24
TRAPPC9-204ENST00000518723 WDR33Q9C0J8 1336 aaKnown RBP16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 PRAMEF22A3QJZ6 481 aa16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 ALDH1B1P30837 517 aa16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 MAP2K1Q02750 393 aaPredicted RBP16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 MAP1SQ66K74 1059 aaPredicted RBP16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 PHACTR3Q96KR7 559 aa16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 PSMD1Q99460 953 aa16.57■□□□□ 0.24
TRAPPC9-204ENST00000518723 SYNE4Q8N205 404 aa16.56■□□□□ 0.24
TRAPPC9-204ENST00000518723 ABHD8Q96I13 439 aa16.56■□□□□ 0.24
TRAPPC9-204ENST00000518723 RSPH6AQ9H0K4 717 aa16.56■□□□□ 0.24
TRAPPC9-204ENST00000518723 NBPF26B4DH59 902 aa16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 SLC34A2O95436 690 aa16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 PRKAR2BP31323 418 aa16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 CRY2Q49AN0 593 aa16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 NBPF10Q6P3W6 841 aaKnown RBP16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 NBPF15Q8N660 670 aa16.55■□□□□ 0.24
TRAPPC9-204ENST00000518723 CC2D2BQ6DHV5 1058 aa16.54■□□□□ 0.24
TRAPPC9-204ENST00000518723 JDP2Q8WYK2 163 aa16.54■□□□□ 0.24
TRAPPC9-204ENST00000518723 DDX21Q9NR30 783 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRAPPC9-204ENST00000518723 ABT1Q9ULW3 272 aaKnown RBP16.53■□□□□ 0.24
TRAPPC9-204ENST00000518723 THSD7BQ9C0I4 1608 aa16.52■□□□□ 0.24
TRAPPC9-204ENST00000518723 EIF6P56537 245 aaKnown RBP16.52■□□□□ 0.24
TRAPPC9-204ENST00000518723 HLFQ16534 295 aa16.52■□□□□ 0.24
TRAPPC9-204ENST00000518723 GRIPAP1Q4V328 841 aa16.52■□□□□ 0.24
TRAPPC9-204ENST00000518723 RTF1Q92541 710 aaKnown RBP16.52■□□□□ 0.24
TRAPPC9-204ENST00000518723 FAM177BA6PVY3 158 aa16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 GTF2E1P29083 439 aaPredicted RBP16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 LMOD1P29536 600 aaPredicted RBP16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 MCM10Q7L590 875 aa16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 NYXQ9GZU5 481 aa16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 ABCC12Q96J65 1359 aa16.51■□□□□ 0.23
TRAPPC9-204ENST00000518723 COL4A5P29400 1685 aa16.5■□□□□ 0.23
TRAPPC9-204ENST00000518723 HTATSF1O43719 755 aaKnown RBP16.5■□□□□ 0.23
TRAPPC9-204ENST00000518723 HOXA10P31260 410 aaPredicted RBP16.5■□□□□ 0.23
TRAPPC9-204ENST00000518723 ECE1P42892 770 aa16.5■□□□□ 0.23
TRAPPC9-204ENST00000518723 SCNN1DP51172 638 aa16.5■□□□□ 0.23
TRAPPC9-204ENST00000518723 CAPNS2Q96L46 248 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms