RNA–Protein interactions for RNA: ENST00000504672.5

PDGFC-204, Transcript of platelet derived growth factor C, humanhuman

TSL 5

Gene PDGFC, Length 786 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-204ENST00000504672 STYK1Q6J9G0 422 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 MORC1Q86VD1 984 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 CNBD1Q8NA66 436 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 C7orf43Q8WVR3 580 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 SETDB2Q96T68 719 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 PANK3Q9H999 370 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 PDZRN3Q9UPQ7 1066 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 RNF123Q5XPI4 1314 aa12.36□□□□□ -0.43
PDGFC-204ENST00000504672 AFDNP55196 1824 aaKnown RBP12.35□□□□□ -0.43
PDGFC-204ENST00000504672 A1BGP04217 495 aa12.35□□□□□ -0.43
PDGFC-204ENST00000504672 CYP4F22Q6NT55 531 aa12.35□□□□□ -0.43
PDGFC-204ENST00000504672 MASTLQ96GX5 879 aa12.35□□□□□ -0.43
PDGFC-204ENST00000504672 CAPNS2Q96L46 248 aa12.35□□□□□ -0.43
PDGFC-204ENST00000504672 GPR101Q96P66 508 aaPredicted RBP12.35□□□□□ -0.43
PDGFC-204ENST00000504672 CCDC88AQ3V6T2 1871 aa12.35□□□□□ -0.43
PDGFC-204ENST00000504672 AOC2O75106 756 aa12.34□□□□□ -0.43
PDGFC-204ENST00000504672 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
PDGFC-204ENST00000504672 VSIG10Q8N0Z9 540 aa12.34□□□□□ -0.43
PDGFC-204ENST00000504672 ZNF496Q96IT1 587 aaPredicted RBP12.34□□□□□ -0.43
PDGFC-204ENST00000504672 BEGAINQ9BUH8 593 aa12.34□□□□□ -0.43
PDGFC-204ENST00000504672 DDX21Q9NR30 783 aaKnown RBP eCLIP12.34□□□□□ -0.43
PDGFC-204ENST00000504672 GJA3Q9Y6H8 435 aa12.34□□□□□ -0.43
PDGFC-204ENST00000504672 FAM177BA6PVY3 158 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 TRAF5O00463 557 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 PIP4K2AP48426 406 aaPredicted RBP12.33□□□□□ -0.44
PDGFC-204ENST00000504672 ST5P78524 1137 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 TRIM26Q12899 539 aaPredicted RBP12.33□□□□□ -0.44
PDGFC-204ENST00000504672 CCDC93Q567U6 631 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 SOGA3Q5TF21 947 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 PNMA8AQ86V59 439 aaPredicted RBP12.33□□□□□ -0.44
PDGFC-204ENST00000504672 ANKRD26Q9UPS8 1709 aa12.33□□□□□ -0.44
PDGFC-204ENST00000504672 NRXN2Q9P2S2 1712 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 CAMTA2O94983 1202 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 FKBP4Q02790 459 aaKnown RBP eCLIP12.32□□□□□ -0.44
PDGFC-204ENST00000504672 CST9Q5W186 159 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 TTC5Q8N0Z6 440 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 SYNE4Q8N205 404 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 MCOLN1Q9GZU1 580 aa12.32□□□□□ -0.44
PDGFC-204ENST00000504672 NBPF5PQ86XG9 351 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-204ENST00000504672 FZD9O00144 591 aa12.3□□□□□ -0.44
PDGFC-204ENST00000504672 NPR1P16066 1061 aa12.3□□□□□ -0.44
PDGFC-204ENST00000504672 IL6STP40189 918 aaPredicted RBP12.3□□□□□ -0.44
PDGFC-204ENST00000504672 IARSP41252 1262 aaKnown RBP12.3□□□□□ -0.44
PDGFC-204ENST00000504672 EPS15P42566 896 aa12.3□□□□□ -0.44
PDGFC-204ENST00000504672 NPM2Q86SE8 214 aaKnown RBP12.3□□□□□ -0.44
PDGFC-204ENST00000504672 SLX4Q8IY92 1834 aa12.3□□□□□ -0.44
PDGFC-204ENST00000504672 KCNQ3O43525 872 aa12.29□□□□□ -0.44
PDGFC-204ENST00000504672 ECE1P42892 770 aa12.29□□□□□ -0.44
PDGFC-204ENST00000504672 DZIP3Q86Y13 1208 aaKnown RBP12.29□□□□□ -0.44
PDGFC-204ENST00000504672 RTKN2Q8IZC4 609 aa12.29□□□□□ -0.44
PDGFC-204ENST00000504672 GPC2Q8N158 579 aa12.29□□□□□ -0.44
PDGFC-204ENST00000504672 IL17REQ8NFR9 667 aa12.29□□□□□ -0.44
PDGFC-204ENST00000504672 TNRC18O15417 2968 aaPredicted RBP12.29□□□□□ -0.44
PDGFC-204ENST00000504672 DLEC1Q9Y238 1755 aa12.28□□□□□ -0.44
PDGFC-204ENST00000504672 DGKZQ13574 1117 aa12.28□□□□□ -0.44
PDGFC-204ENST00000504672 ZNF790Q6PG37 636 aa12.28□□□□□ -0.44
PDGFC-204ENST00000504672 TEX13AQ9BXU3 409 aaPredicted RBP12.28□□□□□ -0.44
PDGFC-204ENST00000504672 FER1L6Q2WGJ9 1857 aa12.27□□□□□ -0.44
PDGFC-204ENST00000504672 ANKRD31Q8N7Z5 1873 aa12.27□□□□□ -0.44
PDGFC-204ENST00000504672 TCERG1O14776 1098 aaKnown RBP12.27□□□□□ -0.45
PDGFC-204ENST00000504672 TEFQ10587 303 aa12.27□□□□□ -0.45
PDGFC-204ENST00000504672 SLC51AQ86UW1 340 aa12.27□□□□□ -0.45
PDGFC-204ENST00000504672 JDP2Q8WYK2 163 aa12.27□□□□□ -0.45
PDGFC-204ENST00000504672 HEG1Q9ULI3 1381 aa12.27□□□□□ -0.45
PDGFC-204ENST00000504672 COL11A2P13942 1736 aaPredicted RBP12.26□□□□□ -0.45
PDGFC-204ENST00000504672 PRAMEF22A3QJZ6 481 aa12.26□□□□□ -0.45
PDGFC-204ENST00000504672 LMOD1P29536 600 aaPredicted RBP12.26□□□□□ -0.45
PDGFC-204ENST00000504672 EIF6P56537 245 aaKnown RBP12.26□□□□□ -0.45
PDGFC-204ENST00000504672 USP16Q9Y5T5 823 aa12.26□□□□□ -0.45
PDGFC-204ENST00000504672 TLL2Q9Y6L7 1015 aa12.26□□□□□ -0.45
PDGFC-204ENST00000504672 VIRMAQ69YN4 1812 aaKnown RBP12.25□□□□□ -0.45
PDGFC-204ENST00000504672 KLRG2A4D1S0 409 aaPredicted RBP12.25□□□□□ -0.45
PDGFC-204ENST00000504672 MAP2K2P36507 400 aa12.25□□□□□ -0.45
PDGFC-204ENST00000504672 SCNN1DP51172 638 aa12.25□□□□□ -0.45
PDGFC-204ENST00000504672 TPTE2Q6XPS3 522 aa12.25□□□□□ -0.45
PDGFC-204ENST00000504672 FMNL2Q96PY5 1086 aa12.25□□□□□ -0.45
PDGFC-204ENST00000504672 ZIC5Q96T25 663 aa12.25□□□□□ -0.45
PDGFC-204ENST00000504672 NIP7Q9Y221 180 aaKnown RBP eCLIP12.25□□□□□ -0.45
PDGFC-204ENST00000504672 DICER1Q9UPY3 1922 aaKnown RBP12.25□□□□□ -0.45
PDGFC-204ENST00000504672 CELF2O95319 508 aaKnown RBP12.24□□□□□ -0.45
PDGFC-204ENST00000504672 GTF2E1P29083 439 aaPredicted RBP12.24□□□□□ -0.45
PDGFC-204ENST00000504672 ALDH1B1P30837 517 aa12.24□□□□□ -0.45
PDGFC-204ENST00000504672 SOX10P56693 466 aa12.24□□□□□ -0.45
PDGFC-204ENST00000504672 CIAPIN1Q6FI81 312 aa12.24□□□□□ -0.45
PDGFC-204ENST00000504672 KNSTRNQ9Y448 316 aa12.24□□□□□ -0.45
PDGFC-204ENST00000504672 SCN11AQ9UI33 1791 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 MRC1P22897 1456 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 DLK2Q6UY11 383 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 SAPCD2Q86UD0 394 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 LARGE2Q8N3Y3 721 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 GLIS2Q9BZE0 524 aaPredicted RBP12.23□□□□□ -0.45
PDGFC-204ENST00000504672 ZNF408Q9H9D4 720 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 SCN4AP35499 1836 aa12.23□□□□□ -0.45
PDGFC-204ENST00000504672 BTBD11A6QL63 1104 aa12.22□□□□□ -0.45
PDGFC-204ENST00000504672 GNAT3A8MTJ3 354 aa12.22□□□□□ -0.45
PDGFC-204ENST00000504672 DIAPH1O60610 1272 aaKnown RBP12.22□□□□□ -0.45
PDGFC-204ENST00000504672 KCNA4P22459 653 aa12.22□□□□□ -0.45
PDGFC-204ENST00000504672 CNGB1Q14028 1251 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-204ENST00000504672 HLFQ16534 295 aa12.22□□□□□ -0.45
PDGFC-204ENST00000504672 CLEC4GQ6UXB4 293 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms