RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KLHDC4Q8TBB5 520 aa20.02■□□□□ 0.79
CCDC88B-210ENST00000494566 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
CCDC88B-210ENST00000494566 SUCLG2Q96I99 432 aa20.01■□□□□ 0.79
CCDC88B-210ENST00000494566 SLIT3O75094 1523 aa20.01■□□□□ 0.79
CCDC88B-210ENST00000494566 ZSCAN30Q86W11 494 aa20.01■□□□□ 0.79
CCDC88B-210ENST00000494566 ZNF830Q96NB3 372 aaPredicted RBP20■□□□□ 0.79
CCDC88B-210ENST00000494566 C19orf44Q9H6X5 657 aa20■□□□□ 0.79
CCDC88B-210ENST00000494566 CPA1P15085 419 aa20■□□□□ 0.79
CCDC88B-210ENST00000494566 GADD45BO75293 160 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-210ENST00000494566 BICC1Q9H694 974 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-210ENST00000494566 PDIA6Q15084 440 aa19.99■□□□□ 0.79
CCDC88B-210ENST00000494566 ZNF790Q6PG37 636 aa19.99■□□□□ 0.79
CCDC88B-210ENST00000494566 KAZALD1Q96I82 304 aa19.99■□□□□ 0.79
CCDC88B-210ENST00000494566 TRPM3Q9HCF6 1732 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 ATF3P18847 181 aa19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 CWC22Q9HCG8 908 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 PHRF1Q9P1Y6 1649 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 PTMAP06454 111 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 RIC3Q7Z5B4 369 aa19.98■□□□□ 0.79
CCDC88B-210ENST00000494566 RASEFQ8IZ41 740 aa19.97■□□□□ 0.79
CCDC88B-210ENST00000494566 CCDC8Q9H0W5 538 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-210ENST00000494566 CLEC17AQ6ZS10 378 aa19.97■□□□□ 0.79
CCDC88B-210ENST00000494566 CNTROBQ8N137 903 aa19.97■□□□□ 0.79
CCDC88B-210ENST00000494566 CLASRPQ8N2M8 674 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-210ENST00000494566 SGSM2O43147 1006 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 AACSQ86V21 672 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 ZNF496Q96IT1 587 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 GRM8O00222 908 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 IGKV5-2P06315 115 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 XAGE3Q8WTP9 111 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 TLR7Q9NYK1 1049 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 TMEM94Q12767 1356 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 HEG1Q9ULI3 1381 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 AOX1Q06278 1338 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 NPHP3Q7Z494 1330 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 NCAPD2Q15021 1401 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 DDX21Q9NR30 783 aaKnown RBP eCLIP19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 HYPKQ9NX55 129 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 ISY1Q9ULR0 285 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 USP16Q9Y5T5 823 aa19.96■□□□□ 0.79
CCDC88B-210ENST00000494566 KDM6AO15550 1401 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 HSPA4P34932 840 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 COPS6Q7L5N1 327 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 C17orf53Q8N3J3 647 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 PPP1R9BQ96SB3 815 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 SLC52A2Q9HAB3 445 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 MEGF6O75095 1541 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 IFIT2P09913 472 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 PHKG2P15735 406 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 MYD88Q99836 296 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 CHMP3Q9Y3E7 222 aa19.95■□□□□ 0.78
CCDC88B-210ENST00000494566 TATP17735 454 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 LSG1Q9H089 658 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 ZMYND15Q9H091 742 aa19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 SNX14Q9Y5W7 946 aa19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 ALDH1L1O75891 902 aa19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 LINS1Q8NG48 757 aa19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 TSC1Q92574 1164 aa19.94■□□□□ 0.78
CCDC88B-210ENST00000494566 FAM177BA6PVY3 158 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 SASH1O94885 1247 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 HSPA2P54652 639 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 PTH1RQ03431 593 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 EPHA10Q5JZY3 1008 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 PTMSP20962 102 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 HSP90AB4PQ58FF6 505 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 DIAPH3Q9NSV4 1193 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 RAD50Q92878 1312 aa19.93■□□□□ 0.78
CCDC88B-210ENST00000494566 ZNF445P59923 1031 aa19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 ANAPC15P60006 121 aa19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 CYP27B1O15528 508 aa19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 MTX1Q13505 466 aa19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 EAF2Q96CJ1 260 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 CHMP4AQ9BY43 222 aa19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 GLRX3O76003 335 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-210ENST00000494566 DDX58O95786 925 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-210ENST00000494566 CUL4AQ13619 759 aa19.91■□□□□ 0.78
CCDC88B-210ENST00000494566 ECHDC1Q9NTX5 307 aa19.91■□□□□ 0.78
CCDC88B-210ENST00000494566 ATP5J2-PTCD1G3V325 749 aa19.91■□□□□ 0.78
CCDC88B-210ENST00000494566 PTCD1O75127 700 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-210ENST00000494566 C5P01031 1676 aa19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 SIPA1L3O60292 1781 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 BOLA2Q9H3K6 86 aa19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 COL9A3Q14050 684 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 DNTTIP2Q5QJE6 756 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 FAM227BQ96M60 508 aa19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 BCL11BQ9C0K0 894 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 CCDC9Q9Y3X0 531 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 NDUFB9Q9Y6M9 179 aa19.9■□□□□ 0.78
CCDC88B-210ENST00000494566 MST1RQ04912 1400 aa19.89■□□□□ 0.78
CCDC88B-210ENST00000494566 AK2P54819 239 aa19.89■□□□□ 0.78
CCDC88B-210ENST00000494566 G3BP1Q13283 466 aaKnown RBP eCLIP19.89■□□□□ 0.78
CCDC88B-210ENST00000494566 PRPF40BQ6NWY9 871 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-210ENST00000494566 EDC3Q96F86 508 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-210ENST00000494566 NEURL1BA8MQ27 555 aa19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 RRP9O43818 475 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 MCM2P49736 904 aa19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 ADCK5Q3MIX3 580 aa19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 GLIPR1L2Q4G1C9 344 aa19.89■□□□□ 0.77
CCDC88B-210ENST00000494566 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms