RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 ZNF652Q9Y2D9 606 aa12.85□□□□□ -0.35
UBR4-216ENST00000494503 DICER1Q9UPY3 1922 aaKnown RBP12.85□□□□□ -0.35
UBR4-216ENST00000494503 FER1L6Q2WGJ9 1857 aa12.85□□□□□ -0.35
UBR4-216ENST00000494503 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
UBR4-216ENST00000494503 SLX4Q8IY92 1834 aa12.84□□□□□ -0.35
UBR4-216ENST00000494503 CAMTA2O94983 1202 aa12.84□□□□□ -0.35
UBR4-216ENST00000494503 PRPF40BQ6NWY9 871 aaKnown RBP12.84□□□□□ -0.35
UBR4-216ENST00000494503 CNKSR1Q969H4 720 aa12.84□□□□□ -0.35
UBR4-216ENST00000494503 RSPH6AQ9H0K4 717 aa12.84□□□□□ -0.35
UBR4-216ENST00000494503 PRAMEF22A3QJZ6 481 aa12.83□□□□□ -0.36
UBR4-216ENST00000494503 NEFMP07197 916 aa12.83□□□□□ -0.36
UBR4-216ENST00000494503 GTF2E1P29083 439 aaPredicted RBP12.83□□□□□ -0.36
UBR4-216ENST00000494503 DCTN1Q14203 1278 aa12.83□□□□□ -0.36
UBR4-216ENST00000494503 USP16Q9Y5T5 823 aa12.83□□□□□ -0.36
UBR4-216ENST00000494503 CEMIPQ8WUJ3 1361 aa12.82□□□□□ -0.36
UBR4-216ENST00000494503 PCNTO95613 3336 aa12.82□□□□□ -0.36
UBR4-216ENST00000494503 SNRPA1P09661 255 aaKnown RBP12.82□□□□□ -0.36
UBR4-216ENST00000494503 NGEFQ8N5V2 710 aa12.82□□□□□ -0.36
UBR4-216ENST00000494503 MASTLQ96GX5 879 aa12.82□□□□□ -0.36
UBR4-216ENST00000494503 SOGA3Q5TF21 947 aa12.81□□□□□ -0.36
UBR4-216ENST00000494503 STYK1Q6J9G0 422 aa12.81□□□□□ -0.36
UBR4-216ENST00000494503 NIP7Q9Y221 180 aaKnown RBP eCLIP12.81□□□□□ -0.36
UBR4-216ENST00000494503 ARFGEF2Q9Y6D5 1785 aa12.81□□□□□ -0.36
UBR4-216ENST00000494503 DDNO94850 711 aaPredicted RBP12.8□□□□□ -0.36
UBR4-216ENST00000494503 SRGNP10124 158 aa12.8□□□□□ -0.36
UBR4-216ENST00000494503 PPP2R1AP30153 589 aa12.8□□□□□ -0.36
UBR4-216ENST00000494503 COL13A1Q5TAT6 717 aaPredicted RBP12.8□□□□□ -0.36
UBR4-216ENST00000494503 TNS4Q8IZW8 715 aa12.8□□□□□ -0.36
UBR4-216ENST00000494503 JMYQ8N9B5 988 aa12.8□□□□□ -0.36
UBR4-216ENST00000494503 CCDC93Q567U6 631 aa12.79□□□□□ -0.36
UBR4-216ENST00000494503 EAPPQ56P03 285 aaPredicted RBP12.79□□□□□ -0.36
UBR4-216ENST00000494503 TPTE2Q6XPS3 522 aa12.79□□□□□ -0.36
UBR4-216ENST00000494503 MIS18AQ9NYP9 233 aa12.79□□□□□ -0.36
UBR4-216ENST00000494503 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
UBR4-216ENST00000494503 HSPA1AP0DMV8 641 aaKnown RBP12.78□□□□□ -0.36
UBR4-216ENST00000494503 HSPA1BP0DMV9 641 aaKnown RBP12.78□□□□□ -0.36
UBR4-216ENST00000494503 NPR1P16066 1061 aa12.78□□□□□ -0.36
UBR4-216ENST00000494503 CHADLQ6NUI6 762 aa12.78□□□□□ -0.36
UBR4-216ENST00000494503 ZNF277Q9NRM2 450 aaPredicted RBP12.78□□□□□ -0.36
UBR4-216ENST00000494503 MKRN1Q9UHC7 482 aaKnown RBP12.78□□□□□ -0.36
UBR4-216ENST00000494503 LAMB4A4D0S4 1761 aa12.78□□□□□ -0.36
UBR4-216ENST00000494503 IQCA1LA6NCM1 817 aa12.77□□□□□ -0.37
UBR4-216ENST00000494503 CLEC4GQ6UXB4 293 aa12.77□□□□□ -0.37
UBR4-216ENST00000494503 CLEC11AQ9Y240 323 aa12.77□□□□□ -0.37
UBR4-216ENST00000494503 LTBP3Q9NS15 1303 aa12.77□□□□□ -0.37
UBR4-216ENST00000494503 POTECB2RU33 542 aa12.76□□□□□ -0.37
UBR4-216ENST00000494503 POTEIP0CG38 1075 aa12.76□□□□□ -0.37
UBR4-216ENST00000494503 POTEJP0CG39 1038 aa12.76□□□□□ -0.37
UBR4-216ENST00000494503 TAF7Q15545 349 aaPredicted RBP12.76□□□□□ -0.37
UBR4-216ENST00000494503 OLFM4Q6UX06 510 aa12.76□□□□□ -0.37
UBR4-216ENST00000494503 KIF6Q6ZMV9 814 aa12.76□□□□□ -0.37
UBR4-216ENST00000494503 RRP7AQ9Y3A4 280 aaKnown RBP12.76□□□□□ -0.37
UBR4-216ENST00000494503 NBPF26B4DH59 902 aa12.75□□□□□ -0.37
UBR4-216ENST00000494503 MYL6BP14649 208 aa12.75□□□□□ -0.37
UBR4-216ENST00000494503 FKBP4Q02790 459 aaKnown RBP eCLIP12.75□□□□□ -0.37
UBR4-216ENST00000494503 HLFQ16534 295 aa12.75□□□□□ -0.37
UBR4-216ENST00000494503 NBPF10Q6P3W6 841 aaKnown RBP12.75□□□□□ -0.37
UBR4-216ENST00000494503 NBPF15Q8N660 670 aa12.75□□□□□ -0.37
UBR4-216ENST00000494503 MAPK8IP3Q9UPT6 1336 aa12.75□□□□□ -0.37
UBR4-216ENST00000494503 SCN4AP35499 1836 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 NUP98P52948 1817 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 ZNF541Q9H0D2 1346 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 TCERG1O14776 1098 aaKnown RBP12.74□□□□□ -0.37
UBR4-216ENST00000494503 HTATSF1O43719 755 aaKnown RBP12.74□□□□□ -0.37
UBR4-216ENST00000494503 GPTP24298 496 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 NUTM1Q86Y26 1132 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 RTKN2Q8IZC4 609 aa12.74□□□□□ -0.37
UBR4-216ENST00000494503 RPGRQ92834 1020 aaKnown RBP12.74□□□□□ -0.37
UBR4-216ENST00000494503 ALDH1B1P30837 517 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 LDHDQ86WU2 507 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 PNISRQ8TF01 805 aaKnown RBP12.73□□□□□ -0.37
UBR4-216ENST00000494503 THUMPD2Q9BTF0 503 aaKnown RBP12.73□□□□□ -0.37
UBR4-216ENST00000494503 NYXQ9GZU5 481 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 ZBTB3Q9H5J0 574 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 CREBZFQ9NS37 354 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 KDM3BQ7LBC6 1761 aa12.73□□□□□ -0.37
UBR4-216ENST00000494503 RNF123Q5XPI4 1314 aa12.72□□□□□ -0.37
UBR4-216ENST00000494503 IARSP41252 1262 aaKnown RBP12.72□□□□□ -0.37
UBR4-216ENST00000494503 JDP2Q8WYK2 163 aa12.72□□□□□ -0.37
UBR4-216ENST00000494503 TAF1DQ9H5J8 278 aaPredicted RBP12.72□□□□□ -0.37
UBR4-216ENST00000494503 HACL1Q9UJ83 578 aa12.72□□□□□ -0.37
UBR4-216ENST00000494503 GJA3Q9Y6H8 435 aa12.72□□□□□ -0.37
UBR4-216ENST00000494503 ABCC12Q96J65 1359 aa12.71□□□□□ -0.37
UBR4-216ENST00000494503 EPHX2P34913 555 aa12.71□□□□□ -0.37
UBR4-216ENST00000494503 SYNE4Q8N205 404 aa12.71□□□□□ -0.37
UBR4-216ENST00000494503 AIDAQ96BJ3 306 aa12.71□□□□□ -0.37
UBR4-216ENST00000494503 MAP3K15Q6ZN16 1313 aa12.7□□□□□ -0.38
UBR4-216ENST00000494503 LMOD1P29536 600 aaPredicted RBP12.7□□□□□ -0.38
UBR4-216ENST00000494503 EIF6P56537 245 aaKnown RBP12.7□□□□□ -0.38
UBR4-216ENST00000494503 TTLL7Q6ZT98 887 aa12.7□□□□□ -0.38
UBR4-216ENST00000494503 C7orf43Q8WVR3 580 aa12.7□□□□□ -0.38
UBR4-216ENST00000494503 TMX4Q9H1E5 349 aaPredicted RBP12.7□□□□□ -0.38
UBR4-216ENST00000494503 EIF2S2P20042 333 aaKnown RBP12.69□□□□□ -0.38
UBR4-216ENST00000494503 NFE2L2Q16236 605 aa12.69□□□□□ -0.38
UBR4-216ENST00000494503 PAXIP1Q6ZW49 1069 aaPredicted RBP12.69□□□□□ -0.38
UBR4-216ENST00000494503 LARGE2Q8N3Y3 721 aa12.69□□□□□ -0.38
UBR4-216ENST00000494503 L3MBTL3Q96JM7 780 aaPredicted RBP12.69□□□□□ -0.38
UBR4-216ENST00000494503 PNNQ9H307 717 aaKnown RBP12.69□□□□□ -0.38
UBR4-216ENST00000494503 TSPYL4Q9UJ04 414 aa12.69□□□□□ -0.38
UBR4-216ENST00000494503 TMEM88BA6NKF7 163 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms