RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 FOXN1O15353 648 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 A1BGP04217 495 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 SRGNP10124 158 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 LDHDQ86WU2 507 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 IL17REQ8NFR9 667 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 FMNL2Q96PY5 1086 aa18.51■□□□□ 0.55
GPNMB-213ENST00000492512 CAMTA2O94983 1202 aa18.5■□□□□ 0.55
GPNMB-213ENST00000492512 GAS2L2Q8NHY3 880 aa18.5■□□□□ 0.55
GPNMB-213ENST00000492512 BCORQ6W2J9 1755 aa18.5■□□□□ 0.55
GPNMB-213ENST00000492512 U2SURPO15042 1029 aaKnown RBP18.49■□□□□ 0.55
GPNMB-213ENST00000492512 DZIP3Q86Y13 1208 aaKnown RBP18.49■□□□□ 0.55
GPNMB-213ENST00000492512 AIDAQ96BJ3 306 aa18.49■□□□□ 0.55
GPNMB-213ENST00000492512 TAF1DQ9H5J8 278 aaPredicted RBP18.49■□□□□ 0.55
GPNMB-213ENST00000492512 PASKQ96RG2 1323 aa18.49■□□□□ 0.55
GPNMB-213ENST00000492512 CCDC93Q567U6 631 aa18.48■□□□□ 0.55
GPNMB-213ENST00000492512 CC2D1BQ5T0F9 858 aaKnown RBP18.48■□□□□ 0.55
GPNMB-213ENST00000492512 L3MBTL3Q96JM7 780 aaPredicted RBP18.48■□□□□ 0.55
GPNMB-213ENST00000492512 PRDM10Q9NQV6 1147 aa18.48■□□□□ 0.55
GPNMB-213ENST00000492512 TMEM88BA6NKF7 163 aa18.47■□□□□ 0.55
GPNMB-213ENST00000492512 CTCFP49711 727 aaPredicted RBP18.47■□□□□ 0.55
GPNMB-213ENST00000492512 EAPPQ56P03 285 aaPredicted RBP18.47■□□□□ 0.55
GPNMB-213ENST00000492512 NBPF5PQ86XG9 351 aaPredicted RBP18.47■□□□□ 0.55
GPNMB-213ENST00000492512 VEGFBP49765 207 aa18.46■□□□□ 0.55
GPNMB-213ENST00000492512 BTBD11A6QL63 1104 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 NPR1P16066 1061 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 C7orf43Q8WVR3 580 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 HACL1Q9UJ83 578 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 CLEC11AQ9Y240 323 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 ZNF652Q9Y2D9 606 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 KIF7Q2M1P5 1343 aa18.45■□□□□ 0.54
GPNMB-213ENST00000492512 KCNQ3O43525 872 aa18.44■□□□□ 0.54
GPNMB-213ENST00000492512 ITGBL1O95965 494 aaPredicted RBP18.44■□□□□ 0.54
GPNMB-213ENST00000492512 PIP4K2AP48426 406 aaPredicted RBP18.44■□□□□ 0.54
GPNMB-213ENST00000492512 FKBP4Q02790 459 aaKnown RBP eCLIP18.44■□□□□ 0.54
GPNMB-213ENST00000492512 CLEC4GQ6UXB4 293 aa18.44■□□□□ 0.54
GPNMB-213ENST00000492512 ZNF277Q9NRM2 450 aaPredicted RBP18.44■□□□□ 0.54
GPNMB-213ENST00000492512 CEMIPQ8WUJ3 1361 aa18.43■□□□□ 0.54
GPNMB-213ENST00000492512 PER1O15534 1290 aaPredicted RBP18.43■□□□□ 0.54
GPNMB-213ENST00000492512 USP16Q9Y5T5 823 aa18.43■□□□□ 0.54
GPNMB-213ENST00000492512 COL3A1P02461 1466 aaPredicted RBP18.43■□□□□ 0.54
GPNMB-213ENST00000492512 ZNF541Q9H0D2 1346 aa18.43■□□□□ 0.54
GPNMB-213ENST00000492512 EPHX2P34913 555 aa18.42■□□□□ 0.54
GPNMB-213ENST00000492512 RTKN2Q8IZC4 609 aa18.42■□□□□ 0.54
GPNMB-213ENST00000492512 CNGB1Q14028 1251 aaPredicted RBP18.41■□□□□ 0.54
GPNMB-213ENST00000492512 TPTE2Q6XPS3 522 aa18.41■□□□□ 0.54
GPNMB-213ENST00000492512 PNMA8AQ86V59 439 aaPredicted RBP18.41■□□□□ 0.54
GPNMB-213ENST00000492512 WBP1LQ9NX94 342 aa18.41■□□□□ 0.54
GPNMB-213ENST00000492512 ADAMTSL1Q8N6G6 1762 aa18.4■□□□□ 0.54
GPNMB-213ENST00000492512 KLRG2A4D1S0 409 aaPredicted RBP18.4■□□□□ 0.54
GPNMB-213ENST00000492512 LBX1P52954 281 aa18.4■□□□□ 0.54
GPNMB-213ENST00000492512 OLFM4Q6UX06 510 aa18.4■□□□□ 0.54
GPNMB-213ENST00000492512 NIP7Q9Y221 180 aaKnown RBP eCLIP18.4■□□□□ 0.54
GPNMB-213ENST00000492512 FAM177BA6PVY3 158 aa18.39■□□□□ 0.53
GPNMB-213ENST00000492512 SNRPA1P09661 255 aaKnown RBP18.39■□□□□ 0.53
GPNMB-213ENST00000492512 DEFB115Q30KQ5 88 aa18.39■□□□□ 0.53
GPNMB-213ENST00000492512 MAP1SQ66K74 1059 aaPredicted RBP18.39■□□□□ 0.53
GPNMB-213ENST00000492512 CNTROBQ8N137 903 aa18.39■□□□□ 0.53
GPNMB-213ENST00000492512 RNF123Q5XPI4 1314 aa18.39■□□□□ 0.53
GPNMB-213ENST00000492512 PRAMEF22A3QJZ6 481 aa18.38■□□□□ 0.53
GPNMB-213ENST00000492512 RASSF10A6NK89 507 aa18.38■□□□□ 0.53
GPNMB-213ENST00000492512 ALDH1B1P30837 517 aa18.38■□□□□ 0.53
GPNMB-213ENST00000492512 PRKAR2BP31323 418 aa18.38■□□□□ 0.53
GPNMB-213ENST00000492512 IARSP41252 1262 aaKnown RBP18.38■□□□□ 0.53
GPNMB-213ENST00000492512 PHACTR3Q96KR7 559 aa18.38■□□□□ 0.53
GPNMB-213ENST00000492512 FZD9O00144 591 aa18.37■□□□□ 0.53
GPNMB-213ENST00000492512 GTF2E1P29083 439 aaPredicted RBP18.37■□□□□ 0.53
GPNMB-213ENST00000492512 SYNE4Q8N205 404 aa18.37■□□□□ 0.53
GPNMB-213ENST00000492512 RGL2O15211 777 aa18.36■□□□□ 0.53
GPNMB-213ENST00000492512 MAP2K1Q02750 393 aaPredicted RBP18.36■□□□□ 0.53
GPNMB-213ENST00000492512 GPC2Q8N158 579 aa18.36■□□□□ 0.53
GPNMB-213ENST00000492512 JDP2Q8WYK2 163 aa18.36■□□□□ 0.53
GPNMB-213ENST00000492512 RTF1Q92541 710 aaKnown RBP18.36■□□□□ 0.53
GPNMB-213ENST00000492512 ABT1Q9ULW3 272 aaKnown RBP18.36■□□□□ 0.53
GPNMB-213ENST00000492512 NPC1L1Q9UHC9 1359 aa18.35■□□□□ 0.53
GPNMB-213ENST00000492512 WDR33Q9C0J8 1336 aaKnown RBP18.35■□□□□ 0.53
GPNMB-213ENST00000492512 HSPA8P11142 646 aaKnown RBP18.35■□□□□ 0.53
GPNMB-213ENST00000492512 RSPH6AQ9H0K4 717 aa18.35■□□□□ 0.53
GPNMB-213ENST00000492512 NBPF26B4DH59 902 aa18.34■□□□□ 0.53
GPNMB-213ENST00000492512 NBPF10Q6P3W6 841 aaKnown RBP18.34■□□□□ 0.53
GPNMB-213ENST00000492512 NBPF15Q8N660 670 aa18.34■□□□□ 0.53
GPNMB-213ENST00000492512 EIF6P56537 245 aaKnown RBP18.33■□□□□ 0.52
GPNMB-213ENST00000492512 MCM10Q7L590 875 aa18.33■□□□□ 0.52
GPNMB-213ENST00000492512 CCER1Q8TC90 406 aaPredicted RBP18.33■□□□□ 0.52
GPNMB-213ENST00000492512 ABHD8Q96I13 439 aa18.33■□□□□ 0.52
GPNMB-213ENST00000492512 CFAP53Q96M91 514 aa18.33■□□□□ 0.52
GPNMB-213ENST00000492512 PSMD1Q99460 953 aa18.33■□□□□ 0.52
GPNMB-213ENST00000492512 GJA3Q9Y6H8 435 aa18.33■□□□□ 0.52
GPNMB-213ENST00000492512 LMOD1P29536 600 aaPredicted RBP18.32■□□□□ 0.52
GPNMB-213ENST00000492512 HLFQ16534 295 aa18.32■□□□□ 0.52
GPNMB-213ENST00000492512 DDX21Q9NR30 783 aaKnown RBP eCLIP18.32■□□□□ 0.52
GPNMB-213ENST00000492512 CC2D2BQ6DHV5 1058 aa18.31■□□□□ 0.52
GPNMB-213ENST00000492512 NUDCQ9Y266 331 aa18.31■□□□□ 0.52
GPNMB-213ENST00000492512 NUP98P52948 1817 aa18.3■□□□□ 0.52
GPNMB-213ENST00000492512 PAXIP1Q6ZW49 1069 aaPredicted RBP18.3■□□□□ 0.52
GPNMB-213ENST00000492512 BEGAINQ9BUH8 593 aa18.3■□□□□ 0.52
GPNMB-213ENST00000492512 NYXQ9GZU5 481 aa18.3■□□□□ 0.52
GPNMB-213ENST00000492512 TRPM7Q96QT4 1865 aa18.3■□□□□ 0.52
GPNMB-213ENST00000492512 SNED1Q8TER0 1413 aa18.3■□□□□ 0.52
GPNMB-213ENST00000492512 LTBP1Q14766 1721 aa18.29■□□□□ 0.52
GPNMB-213ENST00000492512 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms