RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 HYPKQ9NX55 129 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 KIF5BP33176 963 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 NME9Q86XW9 330 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 NSD3Q9BZ95 1437 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 ATP6V1AP38606 617 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 TAF12Q16514 161 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 NAIPQ13075 1403 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 PRKCSHP14314 528 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-212ENST00000491769 RFX1P22670 979 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 LMOD1P29536 600 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-212ENST00000491769 ARL1P40616 181 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-212ENST00000491769 INCENPQ9NQS7 918 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 SNRKQ9NRH2 765 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 IFFO1Q0D2I5 559 aa15.18■□□□□ 0.02
COL6A3-212ENST00000491769 TSNARE1Q96NA8 513 aa15.18■□□□□ 0.02
COL6A3-212ENST00000491769 CWC25Q9NXE8 425 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-212ENST00000491769 RGS22Q8NE09 1264 aa15.18■□□□□ 0.02
COL6A3-212ENST00000491769 TCP11L1Q9NUJ3 509 aa15.18■□□□□ 0.02
COL6A3-212ENST00000491769 MTIF2P46199 727 aaKnown RBP15.18■□□□□ 0.02
COL6A3-212ENST00000491769 CCT2P78371 535 aaKnown RBP15.18■□□□□ 0.02
COL6A3-212ENST00000491769 NUP88Q99567 741 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-212ENST00000491769 TMPOP42166 694 aaKnown RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TTF1Q15361 905 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 IFNL2Q8IZJ0 200 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 DNAAF4Q8WXU2 420 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TFCP2L1Q9NZI6 479 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TMEM57Q8N5G2 664 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 PARP3Q9Y6F1 533 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 F6X3S4 739 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TMEM67Q5HYA8 995 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 BCCIPQ9P287 314 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 GOLIM4O00461 696 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 CCDC152Q4G0S7 254 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 CRNKL1Q9BZJ0 848 aaKnown RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 PRPF4BQ13523 1007 aaKnown RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 JDP2Q8WYK2 163 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 PUS7Q96PZ0 661 aaKnown RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TMCO5BA8MYB1 307 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 TBCAO75347 108 aaKnown RBP15.17■□□□□ 0.02
COL6A3-212ENST00000491769 MAP3K11Q16584 847 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 MAP3K2Q9Y2U5 619 aa15.17■□□□□ 0.02
COL6A3-212ENST00000491769 PHACTR2O75167 634 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 JARID2Q92833 1246 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-212ENST00000491769 ZMYND15Q9H091 742 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 TSPY3P0CV98 308 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 TSPY8P0CW00 308 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 AMPD3Q01432 767 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 OTUD6BQ8N6M0 293 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 CPLX3Q8WVH0 158 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 STX8Q9UNK0 236 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 FERP16591 822 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 DPH6Q7L8W6 267 aa15.16■□□□□ 0.02
COL6A3-212ENST00000491769 GIGYF2Q6Y7W6 1299 aaKnown RBP15.16■□□□□ 0.02
COL6A3-212ENST00000491769 CCDC66A2RUB6 948 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 CEP63Q96MT8 703 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 ZNF408Q9H9D4 720 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 RAB11FIP4Q86YS3 637 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 CNNM3Q8NE01 707 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 EPRSP07814 1512 aaKnown RBP15.15■□□□□ 0.02
COL6A3-212ENST00000491769 MFSD6Q6ZSS7 791 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 BEGAINQ9BUH8 593 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 STX6O43752 255 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 HMGB1P09429 215 aaKnown RBP15.15■□□□□ 0.02
COL6A3-212ENST00000491769 HAND2P61296 217 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 LRRC45Q96CN5 670 aa15.15■□□□□ 0.02
COL6A3-212ENST00000491769 NCBP1Q09161 790 aaKnown RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 SMC1AQ14683 1233 aaKnown RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 TMX1Q9H3N1 280 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 DBF4Q9UBU7 674 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 MSH6P52701 1360 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 RBM10P98175 930 aaKnown RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 CRACR2AQ9BSW2 395 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 IQSEC3Q9UPP2 1182 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 KIF21BO75037 1637 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 LRRC9Q6ZRR7 1453 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 GCOM1H8Y6P7 765 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 MYZAPP0CAP1 466 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 ACTN2P35609 894 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 FAM212AQ96EL1 285 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 GJA3Q9Y6H8 435 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 USO1O60763 962 aaKnown RBP15.14■□□□□ 0.01
COL6A3-212ENST00000491769 ANKRD24Q8TF21 1146 aa15.14■□□□□ 0.01
COL6A3-212ENST00000491769 CFTRP13569 1480 aa15.13■□□□□ 0.01
COL6A3-212ENST00000491769 NOP2P46087 812 aaKnown RBP15.13■□□□□ 0.01
COL6A3-212ENST00000491769 KIF5CO60282 957 aa15.13■□□□□ 0.01
COL6A3-212ENST00000491769 CASQ1P31415 396 aa15.13■□□□□ 0.01
COL6A3-212ENST00000491769 CADPS2Q86UW7 1296 aa15.13■□□□□ 0.01
COL6A3-212ENST00000491769 PPM1EQ8WY54 764 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 TCHPQ9BT92 498 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 PANK2Q9BZ23 570 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 TOP1P11387 765 aaKnown RBP15.12■□□□□ 0.01
COL6A3-212ENST00000491769 MICU3Q86XE3 530 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 EMILIN1Q9Y6C2 1016 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 CASKIN1Q8WXD9 1431 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 RIMBP2O15034 1052 aa15.12■□□□□ 0.01
COL6A3-212ENST00000491769 YEATS4O95619 227 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 UBE3BQ7Z3V4 1068 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 TAOK3Q9H2K8 898 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 ERMNQ8TAM6 284 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms