RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 GPC2Q8N158 579 aa16.09■□□□□ 0.17
HDAC6-233ENST00000489352 ARFGEF2Q9Y6D5 1785 aa16.08■□□□□ 0.17
HDAC6-233ENST00000489352 STYK1Q6J9G0 422 aa16.08■□□□□ 0.16
HDAC6-233ENST00000489352 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.16
HDAC6-233ENST00000489352 CCDC24Q8N4L8 307 aa16.08■□□□□ 0.16
HDAC6-233ENST00000489352 ZNF277Q9NRM2 450 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-233ENST00000489352 FKBP4Q02790 459 aaKnown RBP eCLIP16.07■□□□□ 0.16
HDAC6-233ENST00000489352 C1orf141Q5JVX7 400 aa16.07■□□□□ 0.16
HDAC6-233ENST00000489352 ZNF530Q6P9A1 599 aaPredicted RBP16.07■□□□□ 0.16
HDAC6-233ENST00000489352 MASTLQ96GX5 879 aa16.07■□□□□ 0.16
HDAC6-233ENST00000489352 GJA3Q9Y6H8 435 aa16.07■□□□□ 0.16
HDAC6-233ENST00000489352 TRAF5O00463 557 aa16.06■□□□□ 0.16
HDAC6-233ENST00000489352 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
HDAC6-233ENST00000489352 SAPCD2Q86UD0 394 aa16.06■□□□□ 0.16
HDAC6-233ENST00000489352 JDP2Q8WYK2 163 aa16.06■□□□□ 0.16
HDAC6-233ENST00000489352 BCL2L12Q9HB09 334 aa16.06■□□□□ 0.16
HDAC6-233ENST00000489352 WASHC2AQ641Q2 1341 aa16.05■□□□□ 0.16
HDAC6-233ENST00000489352 EIF6P56537 245 aaKnown RBP16.05■□□□□ 0.16
HDAC6-233ENST00000489352 ST5P78524 1137 aa16.05■□□□□ 0.16
HDAC6-233ENST00000489352 HHIPL1Q96JK4 782 aa16.05■□□□□ 0.16
HDAC6-233ENST00000489352 AKAP11Q9UKA4 1901 aa16.05■□□□□ 0.16
HDAC6-233ENST00000489352 CELF2O95319 508 aaKnown RBP16.04■□□□□ 0.16
HDAC6-233ENST00000489352 CYP19A1P11511 503 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-233ENST00000489352 NOGQ13253 232 aa16.04■□□□□ 0.16
HDAC6-233ENST00000489352 PRR5LQ6MZQ0 368 aa16.04■□□□□ 0.16
HDAC6-233ENST00000489352 RTKN2Q8IZC4 609 aa16.04■□□□□ 0.16
HDAC6-233ENST00000489352 A0A087WZG4 1122 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 FZD9O00144 591 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 SRGNP10124 158 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 AMOTQ4VCS5 1084 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 USP50Q70EL3 339 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-233ENST00000489352 CNBD1Q8NA66 436 aa16.03■□□□□ 0.16
HDAC6-233ENST00000489352 CANXP27824 592 aaKnown RBP16.02■□□□□ 0.16
HDAC6-233ENST00000489352 IARSP41252 1262 aaKnown RBP16.02■□□□□ 0.16
HDAC6-233ENST00000489352 AKAP4Q5JQC9 854 aa16.02■□□□□ 0.16
HDAC6-233ENST00000489352 TBC1D9BQ66K14 1250 aa16.02■□□□□ 0.16
HDAC6-233ENST00000489352 ZNF408Q9H9D4 720 aa16.02■□□□□ 0.16
HDAC6-233ENST00000489352 ZBTB1Q9Y2K1 713 aa16.02■□□□□ 0.16
HDAC6-233ENST00000489352 DLL1O00548 723 aa16.01■□□□□ 0.15
HDAC6-233ENST00000489352 SETDB2Q96T68 719 aa16.01■□□□□ 0.15
HDAC6-233ENST00000489352 EPS15P42566 896 aa16■□□□□ 0.15
HDAC6-233ENST00000489352 CTU1Q7Z7A3 348 aaKnown RBP16■□□□□ 0.15
HDAC6-233ENST00000489352 NPM2Q86SE8 214 aaKnown RBP16■□□□□ 0.15
HDAC6-233ENST00000489352 SYNE4Q8N205 404 aa15.99■□□□□ 0.15
HDAC6-233ENST00000489352 SAGE1Q9NXZ1 904 aa15.99■□□□□ 0.15
HDAC6-233ENST00000489352 C7orf43Q8WVR3 580 aa15.98■□□□□ 0.15
HDAC6-233ENST00000489352 ZNF330Q9Y3S2 320 aaPredicted RBP15.98■□□□□ 0.15
HDAC6-233ENST00000489352 SCN11AQ9UI33 1791 aa15.98■□□□□ 0.15
HDAC6-233ENST00000489352 TRPA1O75762 1119 aa15.97■□□□□ 0.15
HDAC6-233ENST00000489352 EIF4A2Q14240 407 aaKnown RBP15.97■□□□□ 0.15
HDAC6-233ENST00000489352 HPS5Q9UPZ3 1129 aa15.97■□□□□ 0.15
HDAC6-233ENST00000489352 STARD3NLO95772 234 aa15.96■□□□□ 0.15
HDAC6-233ENST00000489352 NPR1P16066 1061 aa15.96■□□□□ 0.15
HDAC6-233ENST00000489352 SIN3AQ96ST3 1273 aa15.96■□□□□ 0.15
HDAC6-233ENST00000489352 PKN2Q16513 984 aaKnown RBP15.95■□□□□ 0.14
HDAC6-233ENST00000489352 FXR1P51114 621 aaKnown RBP eCLIP15.94■□□□□ 0.14
HDAC6-233ENST00000489352 SCNN1DP51172 638 aa15.94■□□□□ 0.14
HDAC6-233ENST00000489352 HUNKP57058 714 aa15.94■□□□□ 0.14
HDAC6-233ENST00000489352 ZIC5Q96T25 663 aa15.94■□□□□ 0.14
HDAC6-233ENST00000489352 ADARB2Q9NS39 739 aaKnown RBP15.94■□□□□ 0.14
HDAC6-233ENST00000489352 TBC1D2BQ9UPU7 963 aa15.94■□□□□ 0.14
HDAC6-233ENST00000489352 BCORQ6W2J9 1755 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 ALDH1B1P30837 517 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 SLC39A6Q13433 755 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 OLFM4Q6UX06 510 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 GLIS2Q9BZE0 524 aaPredicted RBP15.93■□□□□ 0.14
HDAC6-233ENST00000489352 SLC52A2Q9HAB3 445 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 RNF186Q9NXI6 227 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 HDAC9Q9UKV0 1011 aa15.93■□□□□ 0.14
HDAC6-233ENST00000489352 SCN7AQ01118 1682 aa15.92■□□□□ 0.14
HDAC6-233ENST00000489352 EIF5P55010 431 aaKnown RBP15.92■□□□□ 0.14
HDAC6-233ENST00000489352 VSIG10Q8N0Z9 540 aa15.92■□□□□ 0.14
HDAC6-233ENST00000489352 SLC17A8Q8NDX2 589 aa15.92■□□□□ 0.14
HDAC6-233ENST00000489352 TESK2Q96S53 571 aa15.92■□□□□ 0.14
HDAC6-233ENST00000489352 POLKQ9UBT6 870 aa15.92■□□□□ 0.14
HDAC6-233ENST00000489352 NBPF5PQ86XG9 351 aaPredicted RBP15.91■□□□□ 0.14
HDAC6-233ENST00000489352 LARGE2Q8N3Y3 721 aa15.91■□□□□ 0.14
HDAC6-233ENST00000489352 CCDC102AQ96A19 550 aa15.91■□□□□ 0.14
HDAC6-233ENST00000489352 PSMD1Q99460 953 aa15.91■□□□□ 0.14
HDAC6-233ENST00000489352 KIF23Q02241 960 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-233ENST00000489352 CDC37L1Q7L3B6 337 aa15.9■□□□□ 0.14
HDAC6-233ENST00000489352 TNNT2P45379 298 aaPredicted RBP15.89■□□□□ 0.13
HDAC6-233ENST00000489352 RGMBQ6NW40 437 aa15.89■□□□□ 0.13
HDAC6-233ENST00000489352 ZNF157P51786 506 aaPredicted RBP15.88■□□□□ 0.13
HDAC6-233ENST00000489352 NIM1KQ8IY84 436 aa15.88■□□□□ 0.13
HDAC6-233ENST00000489352 TTC5Q8N0Z6 440 aa15.88■□□□□ 0.13
HDAC6-233ENST00000489352 GPRC5DQ9NZD1 345 aa15.88■□□□□ 0.13
HDAC6-233ENST00000489352 C2orf69Q8N8R5 385 aa15.87■□□□□ 0.13
HDAC6-233ENST00000489352 CDCA8Q53HL2 280 aa15.86■□□□□ 0.13
HDAC6-233ENST00000489352 CC2D2BQ6DHV5 1058 aa15.86■□□□□ 0.13
HDAC6-233ENST00000489352 TPTE2Q6XPS3 522 aa15.86■□□□□ 0.13
HDAC6-233ENST00000489352 ZC3H15Q8WU90 426 aaKnown RBP15.86■□□□□ 0.13
HDAC6-233ENST00000489352 GTF2E1P29083 439 aaPredicted RBP15.85■□□□□ 0.13
HDAC6-233ENST00000489352 IL6STP40189 918 aaPredicted RBP15.85■□□□□ 0.13
HDAC6-233ENST00000489352 TEX13AQ9BXU3 409 aaPredicted RBP15.85■□□□□ 0.13
HDAC6-233ENST00000489352 LGR6Q9HBX8 967 aa15.85■□□□□ 0.13
HDAC6-233ENST00000489352 FAM155AB1AL88 458 aaPredicted RBP15.84■□□□□ 0.13
HDAC6-233ENST00000489352 GRIPAP1Q4V328 841 aa15.84■□□□□ 0.13
HDAC6-233ENST00000489352 REM2Q8IYK8 340 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms