RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 RPAP2Q8IXW5 612 aaPredicted RBP12.54□□□□□ -0.4
USP11-211ENST00000489111 ARXQ96QS3 562 aa12.54□□□□□ -0.4
USP11-211ENST00000489111 USP44Q9H0E7 712 aa12.54□□□□□ -0.4
USP11-211ENST00000489111 ZBTB3Q9H5J0 574 aa12.54□□□□□ -0.4
USP11-211ENST00000489111 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
USP11-211ENST00000489111 CEP85Q6P2H3 762 aa12.53□□□□□ -0.4
USP11-211ENST00000489111 ANKRD44Q8N8A2 993 aa12.53□□□□□ -0.4
USP11-211ENST00000489111 CCNL1Q9UK58 526 aaPredicted RBP12.53□□□□□ -0.4
USP11-211ENST00000489111 LRRFIP2Q9Y608 721 aaKnown RBP12.53□□□□□ -0.4
USP11-211ENST00000489111 TJP1Q07157 1748 aa12.53□□□□□ -0.4
USP11-211ENST00000489111 IBTKQ9P2D0 1353 aaPredicted RBP12.53□□□□□ -0.4
USP11-211ENST00000489111 GRM8O00222 908 aa12.52□□□□□ -0.41
USP11-211ENST00000489111 IGKV5-2P06315 115 aa12.52□□□□□ -0.41
USP11-211ENST00000489111 CICQ96RK0 1608 aaPredicted RBP12.51□□□□□ -0.41
USP11-211ENST00000489111 N4BP2Q86UW6 1770 aaPredicted RBP12.51□□□□□ -0.41
USP11-211ENST00000489111 CACNA1FO60840 1977 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 TRIM37O94972 964 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 GCKRQ14397 625 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 INTS5Q6P9B9 1019 aaKnown RBP12.51□□□□□ -0.41
USP11-211ENST00000489111 DZIP3Q86Y13 1208 aaKnown RBP12.51□□□□□ -0.41
USP11-211ENST00000489111 LINC00116Q8NCU8 138 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 GCC1Q96CN9 775 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 MAP3K15Q6ZN16 1313 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 CNTNAP4Q9C0A0 1308 aa12.51□□□□□ -0.41
USP11-211ENST00000489111 ATP5J2-PTCD1G3V325 749 aa12.5□□□□□ -0.41
USP11-211ENST00000489111 NBPF7P0C2Y1 421 aaPredicted RBP12.5□□□□□ -0.41
USP11-211ENST00000489111 HSP90AB3PQ58FF7 597 aa12.5□□□□□ -0.41
USP11-211ENST00000489111 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
USP11-211ENST00000489111 SIRT2Q8IXJ6 389 aa12.5□□□□□ -0.41
USP11-211ENST00000489111 CWC25Q9NXE8 425 aaPredicted RBP12.5□□□□□ -0.41
USP11-211ENST00000489111 ZBTB47Q9UFB7 747 aaPredicted RBP12.5□□□□□ -0.41
USP11-211ENST00000489111 RGS17Q9UGC6 210 aaPredicted RBP12.5□□□□□ -0.41
USP11-211ENST00000489111 COL15A1P39059 1388 aa12.49□□□□□ -0.41
USP11-211ENST00000489111 UTYO14607 1347 aa12.49□□□□□ -0.41
USP11-211ENST00000489111 A0A087WZG4 1122 aa12.49□□□□□ -0.41
USP11-211ENST00000489111 EIF5P55010 431 aaKnown RBP12.49□□□□□ -0.41
USP11-211ENST00000489111 SMC5Q8IY18 1101 aa12.49□□□□□ -0.41
USP11-211ENST00000489111 BTAF1O14981 1849 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 ZNF831Q5JPB2 1677 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 ERVV-1B6SEH8 477 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 HMGB2P26583 209 aaKnown RBP12.48□□□□□ -0.41
USP11-211ENST00000489111 KCNQ4P56696 695 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 TCIRG1Q13488 830 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 RC3H1Q5TC82 1133 aaKnown RBP12.48□□□□□ -0.41
USP11-211ENST00000489111 GIGYF2Q6Y7W6 1299 aaKnown RBP12.48□□□□□ -0.41
USP11-211ENST00000489111 UBE3BQ7Z3V4 1068 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 CCDC191Q8NCU4 936 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 PDZRN3Q9UPQ7 1066 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 TBC1D2BQ9UPU7 963 aa12.48□□□□□ -0.41
USP11-211ENST00000489111 GNPATO15228 680 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 RGS3P49796 1198 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 ATP8B2P98198 1209 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 SLC27A3Q5K4L6 730 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 AK7Q96M32 723 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 ZNF652Q9Y2D9 606 aa12.47□□□□□ -0.41
USP11-211ENST00000489111 RREB1Q92766 1687 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 SRGAP3O43295 1099 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 NUCB1Q02818 461 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 TRIM28Q13263 835 aaKnown RBP12.46□□□□□ -0.41
USP11-211ENST00000489111 PPP1R42Q7Z4L9 355 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 SUCLG2Q96I99 432 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 ISCA1Q9BUE6 129 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 DCTPP1Q9H773 170 aa12.46□□□□□ -0.41
USP11-211ENST00000489111 ARFGEF2Q9Y6D5 1785 aa12.46□□□□□ -0.42
USP11-211ENST00000489111 PNMA6EA0A0J9YXQ4 647 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 RPS6KA4O75676 772 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 GPTP24298 496 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 MTX1Q13505 466 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 HLFQ16534 295 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 ANKRD45Q5TZF3 282 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 CHD1LQ86WJ1 897 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 BICC1Q9H694 974 aaKnown RBP12.45□□□□□ -0.42
USP11-211ENST00000489111 RTCBQ9Y3I0 505 aaKnown RBP12.45□□□□□ -0.42
USP11-211ENST00000489111 NUP188Q5SRE5 1749 aa12.45□□□□□ -0.42
USP11-211ENST00000489111 CAMTA2O94983 1202 aa12.44□□□□□ -0.42
USP11-211ENST00000489111 APBA3O96018 575 aa12.44□□□□□ -0.42
USP11-211ENST00000489111 POLA2Q14181 598 aa12.44□□□□□ -0.42
USP11-211ENST00000489111 SSH3Q8TE77 659 aa12.44□□□□□ -0.42
USP11-211ENST00000489111 BRWD3Q6RI45 1802 aa12.44□□□□□ -0.42
USP11-211ENST00000489111 COL5A3P25940 1745 aaPredicted RBP12.43□□□□□ -0.42
USP11-211ENST00000489111 H7C1W4 665 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 APBB1O00213 710 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 PCCAP05165 728 aaPredicted RBP12.43□□□□□ -0.42
USP11-211ENST00000489111 HSP90AB4PQ58FF6 505 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 NLRP10Q86W26 655 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 JARID2Q92833 1246 aaPredicted RBP12.43□□□□□ -0.42
USP11-211ENST00000489111 LNPKQ9C0E8 428 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 EXOC6BQ9Y2D4 811 aa12.43□□□□□ -0.42
USP11-211ENST00000489111 KAT6BQ8WYB5 2073 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 RGL2O15211 777 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 ZPR1O75312 459 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 CASP7P55210 303 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 OS9Q13438 667 aaPredicted RBP12.42□□□□□ -0.42
USP11-211ENST00000489111 TXNRD1Q16881 649 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 PARP10Q53GL7 1025 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 RTL5Q5HYW3 569 aaPredicted RBP12.42□□□□□ -0.42
USP11-211ENST00000489111 ZBTB38Q8NAP3 1195 aaPredicted RBP12.42□□□□□ -0.42
USP11-211ENST00000489111 LRRC4BQ9NT99 713 aa12.42□□□□□ -0.42
USP11-211ENST00000489111 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms