RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 HSPA5P11021 654 aaKnown RBP8.78□□□□□ -1
PTCH1-211ENST00000488809 TRIM26Q12899 539 aaPredicted RBP8.78□□□□□ -1
PTCH1-211ENST00000488809 ZNF790Q6PG37 636 aa8.78□□□□□ -1
PTCH1-211ENST00000488809 L3MBTL3Q96JM7 780 aaPredicted RBP8.78□□□□□ -1
PTCH1-211ENST00000488809 FMNL2Q96PY5 1086 aa8.78□□□□□ -1
PTCH1-211ENST00000488809 TBC1D2BQ9UPU7 963 aa8.78□□□□□ -1
PTCH1-211ENST00000488809 ZNF652Q9Y2D9 606 aa8.78□□□□□ -1
PTCH1-211ENST00000488809 PASKQ96RG2 1323 aa8.78□□□□□ -1
PTCH1-211ENST00000488809 ADAMTSL1Q8N6G6 1762 aa8.77□□□□□ -1.01
PTCH1-211ENST00000488809 GNAT3A8MTJ3 354 aa8.77□□□□□ -1.01
PTCH1-211ENST00000488809 EAPPQ56P03 285 aaPredicted RBP8.77□□□□□ -1.01
PTCH1-211ENST00000488809 PNMA8AQ86V59 439 aaPredicted RBP8.77□□□□□ -1.01
PTCH1-211ENST00000488809 DZIP3Q86Y13 1208 aaKnown RBP8.77□□□□□ -1.01
PTCH1-211ENST00000488809 ZNF496Q96IT1 587 aaPredicted RBP8.77□□□□□ -1.01
PTCH1-211ENST00000488809 TAF1DQ9H5J8 278 aaPredicted RBP8.77□□□□□ -1.01
PTCH1-211ENST00000488809 HACL1Q9UJ83 578 aa8.77□□□□□ -1.01
PTCH1-211ENST00000488809 CLEC11AQ9Y240 323 aa8.77□□□□□ -1.01
PTCH1-211ENST00000488809 POTEIP0CG38 1075 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 POTEJP0CG39 1038 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 NPR1P16066 1061 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 MAP2K1Q02750 393 aaPredicted RBP8.76□□□□□ -1.01
PTCH1-211ENST00000488809 FKBP4Q02790 459 aaKnown RBP eCLIP8.76□□□□□ -1.01
PTCH1-211ENST00000488809 CLEC4GQ6UXB4 293 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 NBPF5PQ86XG9 351 aaPredicted RBP8.76□□□□□ -1.01
PTCH1-211ENST00000488809 RTKN2Q8IZC4 609 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 CCDC24Q8N4L8 307 aa8.76□□□□□ -1.01
PTCH1-211ENST00000488809 CAMTA2O94983 1202 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 ALDH1B1P30837 517 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 EPHX2P34913 555 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 VEGFBP49765 207 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 DEFB115Q30KQ5 88 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 AMER1Q5JTC6 1135 aaPredicted RBP8.75□□□□□ -1.01
PTCH1-211ENST00000488809 TPTE2Q6XPS3 522 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 BEGAINQ9BUH8 593 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 WBP1LQ9NX94 342 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 LAMB4A4D0S4 1761 aa8.75□□□□□ -1.01
PTCH1-211ENST00000488809 RASSF10A6NK89 507 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 BTBD11A6QL63 1104 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 U2SURPO15042 1029 aaKnown RBP8.74□□□□□ -1.01
PTCH1-211ENST00000488809 RGL2O15211 777 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 LMOD1P29536 600 aaPredicted RBP8.74□□□□□ -1.01
PTCH1-211ENST00000488809 ECE1P42892 770 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 LBX1P52954 281 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 JDP2Q8WYK2 163 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 ABT1Q9ULW3 272 aaKnown RBP8.74□□□□□ -1.01
PTCH1-211ENST00000488809 NUP98P52948 1817 aa8.74□□□□□ -1.01
PTCH1-211ENST00000488809 THSD7BQ9C0I4 1608 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 ITGBL1O95965 494 aaPredicted RBP8.73□□□□□ -1.01
PTCH1-211ENST00000488809 A1BGP04217 495 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 GTF2E1P29083 439 aaPredicted RBP8.73□□□□□ -1.01
PTCH1-211ENST00000488809 IARSP41252 1262 aaKnown RBP8.73□□□□□ -1.01
PTCH1-211ENST00000488809 CNTROBQ8N137 903 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 GPC2Q8N158 579 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 IL17REQ8NFR9 667 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 ZNF277Q9NRM2 450 aaPredicted RBP8.73□□□□□ -1.01
PTCH1-211ENST00000488809 RNF123Q5XPI4 1314 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 WDR33Q9C0J8 1336 aaKnown RBP8.73□□□□□ -1.01
PTCH1-211ENST00000488809 ZNF541Q9H0D2 1346 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 CEMIPQ8WUJ3 1361 aa8.73□□□□□ -1.01
PTCH1-211ENST00000488809 EIF6P56537 245 aaKnown RBP8.72□□□□□ -1.01
PTCH1-211ENST00000488809 GRIPAP1Q4V328 841 aa8.72□□□□□ -1.01
PTCH1-211ENST00000488809 CC2D2BQ6DHV5 1058 aa8.72□□□□□ -1.01
PTCH1-211ENST00000488809 PAXIP1Q6ZW49 1069 aaPredicted RBP8.72□□□□□ -1.01
PTCH1-211ENST00000488809 C7orf43Q8WVR3 580 aa8.72□□□□□ -1.01
PTCH1-211ENST00000488809 RTF1Q92541 710 aaKnown RBP8.72□□□□□ -1.01
PTCH1-211ENST00000488809 ABHD8Q96I13 439 aa8.72□□□□□ -1.01
PTCH1-211ENST00000488809 NYXQ9GZU5 481 aa8.72□□□□□ -1.01
PTCH1-211ENST00000488809 NIP7Q9Y221 180 aaKnown RBP eCLIP8.72□□□□□ -1.01
PTCH1-211ENST00000488809 COL3A1P02461 1466 aaPredicted RBP8.71□□□□□ -1.01
PTCH1-211ENST00000488809 KLRG2A4D1S0 409 aaPredicted RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 FZD9O00144 591 aa8.71□□□□□ -1.02
PTCH1-211ENST00000488809 SLC34A2O95436 690 aa8.71□□□□□ -1.02
PTCH1-211ENST00000488809 SNRPA1P09661 255 aaKnown RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 HSPA8P11142 646 aaKnown RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 CC2D1BQ5T0F9 858 aaKnown RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 MAP1SQ66K74 1059 aaPredicted RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 CFAP53Q96M91 514 aa8.71□□□□□ -1.02
PTCH1-211ENST00000488809 PSMD1Q99460 953 aa8.71□□□□□ -1.02
PTCH1-211ENST00000488809 PCGF6Q9BYE7 350 aa8.71□□□□□ -1.02
PTCH1-211ENST00000488809 TMX4Q9H1E5 349 aaPredicted RBP8.71□□□□□ -1.02
PTCH1-211ENST00000488809 FAM161AQ3B820 660 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 SYNE4Q8N205 404 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 DDX21Q9NR30 783 aaKnown RBP eCLIP8.7□□□□□ -1.02
PTCH1-211ENST00000488809 NUDCQ9Y266 331 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 USP16Q9Y5T5 823 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 GJA3Q9Y6H8 435 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 NPC1L1Q9UHC9 1359 aa8.7□□□□□ -1.02
PTCH1-211ENST00000488809 CA12O43570 354 aa8.69□□□□□ -1.02
PTCH1-211ENST00000488809 MLLT1Q03111 559 aaPredicted RBP8.69□□□□□ -1.02
PTCH1-211ENST00000488809 USP50Q70EL3 339 aaPredicted RBP8.69□□□□□ -1.02
PTCH1-211ENST00000488809 RPGRQ92834 1020 aaKnown RBP8.69□□□□□ -1.02
PTCH1-211ENST00000488809 CAPNS2Q96L46 248 aa8.69□□□□□ -1.02
PTCH1-211ENST00000488809 DLG5Q8TDM6 1919 aa8.69□□□□□ -1.02
PTCH1-211ENST00000488809 KIF7Q2M1P5 1343 aa8.69□□□□□ -1.02
PTCH1-211ENST00000488809 CASP8AP2Q9UKL3 1982 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 FAM177BA6PVY3 158 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 PRKAR2BP31323 418 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 PIP4K2AP48426 406 aaPredicted RBP8.68□□□□□ -1.02
PTCH1-211ENST00000488809 GRM1Q13255 1194 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms