RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 MEX3CQ5U5Q3 659 aaKnown RBP11.78□□□□□ -0.52
SF3B1-211ENST00000487698 SYTL4Q96C24 671 aaPredicted RBP11.78□□□□□ -0.52
SF3B1-211ENST00000487698 NEURL1BA8MQ27 555 aa11.77□□□□□ -0.52
SF3B1-211ENST00000487698 NEXNQ0ZGT2 675 aa11.77□□□□□ -0.52
SF3B1-211ENST00000487698 MTX1Q13505 466 aa11.77□□□□□ -0.52
SF3B1-211ENST00000487698 SSH3Q8TE77 659 aa11.77□□□□□ -0.52
SF3B1-211ENST00000487698 RBM42Q9BTD8 480 aaKnown RBP11.77□□□□□ -0.52
SF3B1-211ENST00000487698 BTAF1O14981 1849 aa11.77□□□□□ -0.53
SF3B1-211ENST00000487698 GRM8O00222 908 aa11.77□□□□□ -0.53
SF3B1-211ENST00000487698 POLA2Q14181 598 aa11.77□□□□□ -0.53
SF3B1-211ENST00000487698 STARD3NLO95772 234 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 CYP19A1P11511 503 aaPredicted RBP11.76□□□□□ -0.53
SF3B1-211ENST00000487698 GCKRQ14397 625 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 TTLL7Q6ZT98 887 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 ACSBG1Q96GR2 724 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 GJD4Q96KN9 370 aaPredicted RBP11.76□□□□□ -0.53
SF3B1-211ENST00000487698 MYD88Q99836 296 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 C9orf78Q9NZ63 289 aaPredicted RBP11.76□□□□□ -0.53
SF3B1-211ENST00000487698 MYH14Q7Z406 1995 aaKnown RBP11.76□□□□□ -0.53
SF3B1-211ENST00000487698 TUBGCP6Q96RT7 1819 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 COL15A1P39059 1388 aa11.76□□□□□ -0.53
SF3B1-211ENST00000487698 NUP98P52948 1817 aa11.75□□□□□ -0.53
SF3B1-211ENST00000487698 PPP1R42Q7Z4L9 355 aa11.75□□□□□ -0.53
SF3B1-211ENST00000487698 KAZALD1Q96I82 304 aa11.75□□□□□ -0.53
SF3B1-211ENST00000487698 HDAC5Q9UQL6 1122 aa11.75□□□□□ -0.53
SF3B1-211ENST00000487698 ONECUT3O60422 494 aaPredicted RBP11.74□□□□□ -0.53
SF3B1-211ENST00000487698 PALLDQ8WX93 1383 aa11.74□□□□□ -0.53
SF3B1-211ENST00000487698 KCNQ2O43526 872 aa11.74□□□□□ -0.53
SF3B1-211ENST00000487698 TRPC5Q9UL62 973 aaPredicted RBP11.74□□□□□ -0.53
SF3B1-211ENST00000487698 EXOC6BQ9Y2D4 811 aa11.74□□□□□ -0.53
SF3B1-211ENST00000487698 SRGAP3O43295 1099 aa11.73□□□□□ -0.53
SF3B1-211ENST00000487698 LY75O60449 1722 aa11.73□□□□□ -0.53
SF3B1-211ENST00000487698 SUCLG2Q96I99 432 aa11.73□□□□□ -0.53
SF3B1-211ENST00000487698 BRWD3Q6RI45 1802 aa11.73□□□□□ -0.53
SF3B1-211ENST00000487698 PLEKHM2Q8IWE5 1019 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 ZBTB3Q9H5J0 574 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 LOC102724428A0A0B4J2F2 783 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 SMARCA5O60264 1052 aaPredicted RBP11.72□□□□□ -0.53
SF3B1-211ENST00000487698 CASP7P55210 303 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 SIK1P57059 783 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 BMP2KLQ5H9B9 411 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 SMARCC1Q92922 1105 aaPredicted RBP11.72□□□□□ -0.53
SF3B1-211ENST00000487698 ZBTB1Q9Y2K1 713 aa11.72□□□□□ -0.53
SF3B1-211ENST00000487698 BCORQ6W2J9 1755 aa11.71□□□□□ -0.53
SF3B1-211ENST00000487698 A0A0G2JS52 829 aa11.71□□□□□ -0.53
SF3B1-211ENST00000487698 ATP5J2-PTCD1G3V325 749 aa11.71□□□□□ -0.53
SF3B1-211ENST00000487698 MYT1Q01538 1121 aa11.71□□□□□ -0.53
SF3B1-211ENST00000487698 BICC1Q9H694 974 aaKnown RBP11.71□□□□□ -0.53
SF3B1-211ENST00000487698 TAF1LQ8IZX4 1826 aa11.71□□□□□ -0.53
SF3B1-211ENST00000487698 SALL3Q9BXA9 1300 aa11.71□□□□□ -0.54
SF3B1-211ENST00000487698 APBB1O00213 710 aa11.71□□□□□ -0.54
SF3B1-211ENST00000487698 IL6STP40189 918 aaPredicted RBP11.71□□□□□ -0.54
SF3B1-211ENST00000487698 ITPK1Q13572 414 aa11.71□□□□□ -0.54
SF3B1-211ENST00000487698 C16orf71Q8IYS4 520 aaPredicted RBP11.71□□□□□ -0.54
SF3B1-211ENST00000487698 OTUD7AQ8TE49 926 aaPredicted RBP11.71□□□□□ -0.54
SF3B1-211ENST00000487698 ISCA1Q9BUE6 129 aa11.71□□□□□ -0.54
SF3B1-211ENST00000487698 LRRCC1Q9C099 1032 aa11.71□□□□□ -0.54
SF3B1-211ENST00000487698 ZBTB47Q9UFB7 747 aaPredicted RBP11.71□□□□□ -0.54
SF3B1-211ENST00000487698 NOP58Q9Y2X3 529 aaKnown RBP11.71□□□□□ -0.54
SF3B1-211ENST00000487698 MAP3K15Q6ZN16 1313 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 H7C1W4 665 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 RAB11FIP3O75154 756 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 ATP6V1AP38606 617 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 RABL6Q3YEC7 729 aaPredicted RBP11.7□□□□□ -0.54
SF3B1-211ENST00000487698 INTS5Q6P9B9 1019 aaKnown RBP11.7□□□□□ -0.54
SF3B1-211ENST00000487698 KIF6Q6ZMV9 814 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 UBE3BQ7Z3V4 1068 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 CCDC191Q8NCU4 936 aa11.7□□□□□ -0.54
SF3B1-211ENST00000487698 CWC25Q9NXE8 425 aaPredicted RBP11.7□□□□□ -0.54
SF3B1-211ENST00000487698 A0A087WZG4 1122 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 TRIM28Q13263 835 aaKnown RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 TCIRG1Q13488 830 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 EPHA10Q5JZY3 1008 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 CCDC87Q9NVE4 849 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 SURF6O75683 361 aaKnown RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 CRKLP46109 303 aaKnown RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 EIF5P55010 431 aaKnown RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 GIGYF2Q6Y7W6 1299 aaKnown RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 PTF1AQ7RTS3 328 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 SEPT12Q8IYM1 358 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 OSBPL3Q9H4L5 887 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 ZNF330Q9Y3S2 320 aaPredicted RBP11.69□□□□□ -0.54
SF3B1-211ENST00000487698 MYH3P11055 1940 aa11.69□□□□□ -0.54
SF3B1-211ENST00000487698 GSPT1P15170 499 aaKnown RBP11.68□□□□□ -0.54
SF3B1-211ENST00000487698 TTC22Q5TAA0 569 aa11.68□□□□□ -0.54
SF3B1-211ENST00000487698 QTRT2Q9H974 415 aaKnown RBP11.68□□□□□ -0.54
SF3B1-211ENST00000487698 SEC24BO95487 1268 aa11.68□□□□□ -0.54
SF3B1-211ENST00000487698 HSP90AB4PQ58FF6 505 aa11.68□□□□□ -0.54
SF3B1-211ENST00000487698 RHPN1Q8TCX5 695 aa11.68□□□□□ -0.54
SF3B1-211ENST00000487698 ERVV-1B6SEH8 477 aa11.67□□□□□ -0.54
SF3B1-211ENST00000487698 JARID2Q92833 1246 aaPredicted RBP11.67□□□□□ -0.54
SF3B1-211ENST00000487698 SCN7AQ01118 1682 aa11.67□□□□□ -0.54
SF3B1-211ENST00000487698 PDE1AP54750 535 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 FOXO4P98177 505 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 HLFQ16534 295 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 FAM182BQ5T319 152 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 KIF1BPQ96EK5 621 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 AK9Q5TCS8 1911 aa11.66□□□□□ -0.54
SF3B1-211ENST00000487698 RFX5P48382 616 aaPredicted RBP11.66□□□□□ -0.54
SF3B1-211ENST00000487698 HSP90AB3PQ58FF7 597 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms