RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 USP17L2Q6R6M4 530 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 BICDL1Q6ZP65 573 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 USP17L1Q7RTZ2 530 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 TPCN2Q8NHX9 752 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 SLC30A3Q99726 388 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 TSPAN10Q9H1Z9 355 aaPredicted RBP8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 MARK1Q9P0L2 795 aa8.24□□□□□ -1.09
SNRNP40-205ENST00000486941 GNB5O14775 395 aa8.23□□□□□ -1.09
SNRNP40-205ENST00000486941 C21orf2O43822 256 aa8.23□□□□□ -1.09
SNRNP40-205ENST00000486941 CHRNA4P43681 627 aa8.23□□□□□ -1.09
SNRNP40-205ENST00000486941 CCDC102BQ68D86 513 aa8.23□□□□□ -1.09
SNRNP40-205ENST00000486941 AVENQ9NQS1 362 aaPredicted RBP8.23□□□□□ -1.09
SNRNP40-205ENST00000486941 ITGB7P26010 798 aa8.22□□□□□ -1.09
SNRNP40-205ENST00000486941 COL9A3Q14050 684 aaPredicted RBP8.22□□□□□ -1.09
SNRNP40-205ENST00000486941 FNBP4Q8N3X1 1017 aaPredicted RBP8.22□□□□□ -1.09
SNRNP40-205ENST00000486941 CLUAP1Q96AJ1 413 aa8.22□□□□□ -1.09
SNRNP40-205ENST00000486941 SFI1A8K8P3 1242 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 ATP9BO43861 1147 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 FURINP09958 794 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 UBTFP17480 764 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 SYT9Q86SS6 491 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 OGFOD1Q8N543 542 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 TSEN2Q8NCE0 465 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 ZNF280CQ8ND82 737 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 STARD13Q9Y3M8 1113 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 HCN4Q9Y3Q4 1203 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 BICRAQ9NZM4 1560 aa8.21□□□□□ -1.1
SNRNP40-205ENST00000486941 SERTM1A2A2V5 107 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 LAMC2Q13753 1193 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 HSH2DQ96JZ2 352 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 MKRN1Q9UHC7 482 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 PRR12Q9ULL5 1215 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 ZNF232Q9UNY5 417 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 GJA3Q9Y6H8 435 aa8.2□□□□□ -1.1
SNRNP40-205ENST00000486941 RAD21O60216 631 aa8.19□□□□□ -1.1
SNRNP40-205ENST00000486941 ALYREFQ86V81 257 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-205ENST00000486941 TRIM50Q86XT4 487 aa8.19□□□□□ -1.1
SNRNP40-205ENST00000486941 GAS2L2Q8NHY3 880 aa8.19□□□□□ -1.1
SNRNP40-205ENST00000486941 ELOA3CA0A087WX78 387 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 ELOA3DA6NLF2 546 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 HIRAP54198 1017 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 FLIIQ13045 1269 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 ELOA3BQ3SY89 546 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 C8orf86Q6ZUL3 223 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 RAB44Q7Z6P3 723 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 SIX5Q8N196 739 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 ELOA3Q8NG57 546 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 PLVAPQ9BX97 442 aa8.18□□□□□ -1.1
SNRNP40-205ENST00000486941 K7ELQ4 463 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 XP32Q5T750 250 aa8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 LARGE2Q8N3Y3 721 aa8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 ZNF594Q96JF6 807 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 PHACTR1Q9C0D0 580 aa8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 TFIP11Q9UBB9 837 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-205ENST00000486941 M0R2N6 131 aa8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 LGR5O75473 907 aa8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 PSMA6P60900 246 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 C1orf53Q5VUE5 145 aa8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 RHPN1Q8TCX5 695 aa8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 SUSD3Q96L08 255 aa8.16□□□□□ -1.1
SNRNP40-205ENST00000486941 PALM3A6NDB9 673 aaPredicted RBP8.15□□□□□ -1.1
SNRNP40-205ENST00000486941 ADARB2-AS1A8MUL3 147 aa8.15□□□□□ -1.1
SNRNP40-205ENST00000486941 SIN3BO75182 1162 aa8.15□□□□□ -1.1
SNRNP40-205ENST00000486941 ATP1A2P50993 1020 aa8.15□□□□□ -1.1
SNRNP40-205ENST00000486941 WWC1Q8IX03 1113 aa8.15□□□□□ -1.1
SNRNP40-205ENST00000486941 ALBP02768 609 aa8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 TYRO3Q06418 890 aa8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 SPEM2Q0P670 501 aa8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 GLMNQ92990 594 aa8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 TNFRSF25Q93038 417 aa8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 MAFBQ9Y5Q3 323 aaPredicted RBP8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 GPC6Q9Y625 555 aaPredicted RBP8.14□□□□□ -1.11
SNRNP40-205ENST00000486941 DCAF1Q9Y4B6 1507 aa8.13□□□□□ -1.11
SNRNP40-205ENST00000486941 KCNQ4P56696 695 aa8.13□□□□□ -1.11
SNRNP40-205ENST00000486941 C20orf204Q6ZNR8 217 aa8.13□□□□□ -1.11
SNRNP40-205ENST00000486941 C2orf49Q9BVC5 232 aaPredicted RBP8.13□□□□□ -1.11
SNRNP40-205ENST00000486941 ATAD2Q6PL18 1390 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 FAM229AH3BQW9 127 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 PPP1R12BO60237 982 aaPredicted RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 GRNP28799 593 aaKnown RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 DOC2BQ14184 412 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 CRTC2Q53ET0 693 aaPredicted RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 KANK4Q5T7N3 995 aaPredicted RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 ALDH16A1Q8IZ83 802 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 MICALL1Q8N3F8 863 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 CEP63Q96MT8 703 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 BRD7Q9NPI1 651 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 NOP53Q9NZM5 478 aaKnown RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 BCS1LQ9Y276 419 aa8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 ZCCHC6Q5VYS8 1495 aaKnown RBP8.12□□□□□ -1.11
SNRNP40-205ENST00000486941 M0R082 166 aa8.11□□□□□ -1.11
SNRNP40-205ENST00000486941 ZNF417Q8TAU3 575 aa8.11□□□□□ -1.11
SNRNP40-205ENST00000486941 ZNF587Q96SQ5 575 aaPredicted RBP8.11□□□□□ -1.11
SNRNP40-205ENST00000486941 SHROOM4Q9ULL8 1493 aa8.11□□□□□ -1.11
SNRNP40-205ENST00000486941 NID1P14543 1247 aa8.1□□□□□ -1.11
SNRNP40-205ENST00000486941 RASA1P20936 1047 aa8.1□□□□□ -1.11
SNRNP40-205ENST00000486941 PROSER2Q86WR7 435 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-205ENST00000486941 SCG3Q8WXD2 468 aaKnown RBP8.1□□□□□ -1.11
SNRNP40-205ENST00000486941 NEUROD4Q9HD90 331 aa8.1□□□□□ -1.11
SNRNP40-205ENST00000486941 DMGDHQ9UI17 866 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms