RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 GYS1P13807 737 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 USPL1Q5W0Q7 1092 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 GIGYF2Q6Y7W6 1299 aaKnown RBP10.54□□□□□ -0.72
USP54-212ENST00000480210 XAGE3Q8WTP9 111 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 NECTIN2Q92692 538 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 ANP32EQ9BTT0 268 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 TBC1D2BQ9UPU7 963 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 PTPRCP08575 1304 aa10.54□□□□□ -0.72
USP54-212ENST00000480210 SCN7AQ01118 1682 aa10.53□□□□□ -0.72
USP54-212ENST00000480210 ANKRD36CQ5JPF3 1778 aa10.53□□□□□ -0.72
USP54-212ENST00000480210 IPO8O15397 1037 aaKnown RBP10.53□□□□□ -0.72
USP54-212ENST00000480210 KSR2Q6VAB6 950 aa10.53□□□□□ -0.72
USP54-212ENST00000480210 RIC3Q7Z5B4 369 aa10.53□□□□□ -0.72
USP54-212ENST00000480210 ARHGAP45Q92619 1136 aa10.53□□□□□ -0.72
USP54-212ENST00000480210 TM4SF1P30408 202 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 PIP4K2AP48426 406 aaPredicted RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 RARSP54136 660 aaKnown RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 AIMP1Q12904 312 aaKnown RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 FLIIQ13045 1269 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 TRIM28Q13263 835 aaKnown RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 PROSER3Q2NL68 480 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 PARP10Q53GL7 1025 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 AMIGO3Q86WK7 504 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 MRPL50Q8N5N7 158 aaKnown RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 YTHDC1Q96MU7 727 aaKnown RBP10.52□□□□□ -0.73
USP54-212ENST00000480210 SETDB2Q96T68 719 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 PARP3Q9Y6F1 533 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 KIF16BQ96L93 1317 aa10.52□□□□□ -0.73
USP54-212ENST00000480210 ANXA1P04083 346 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 NEXNQ0ZGT2 675 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 FKBP5Q13451 457 aaPredicted RBP10.51□□□□□ -0.73
USP54-212ENST00000480210 TCIRG1Q13488 830 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 TTLL7Q6ZT98 887 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 PPP1R42Q7Z4L9 355 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 SSH1Q8WYL5 1049 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 NYXQ9GZU5 481 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 PHAXQ9H814 394 aaKnown RBP10.51□□□□□ -0.73
USP54-212ENST00000480210 BCL2L12Q9HB09 334 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 SMC4Q9NTJ3 1288 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 PDZRN3Q9UPQ7 1066 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 ARFGEF2Q9Y6D5 1785 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 RNF123Q5XPI4 1314 aa10.51□□□□□ -0.73
USP54-212ENST00000480210 ATP10DQ9P241 1426 aa10.5□□□□□ -0.73
USP54-212ENST00000480210 AFDNP55196 1824 aaKnown RBP10.5□□□□□ -0.73
USP54-212ENST00000480210 MS4A1P11836 297 aa10.5□□□□□ -0.73
USP54-212ENST00000480210 HSP90B1P14625 803 aaKnown RBP10.5□□□□□ -0.73
USP54-212ENST00000480210 FKBP8Q14318 412 aa10.5□□□□□ -0.73
USP54-212ENST00000480210 TPTE2Q6XPS3 522 aa10.5□□□□□ -0.73
USP54-212ENST00000480210 ZNF34Q8IZ26 560 aa10.5□□□□□ -0.73
USP54-212ENST00000480210 METTL22Q9BUU2 404 aaPredicted RBP10.5□□□□□ -0.73
USP54-212ENST00000480210 API5Q9BZZ5 524 aaKnown RBP10.5□□□□□ -0.73
USP54-212ENST00000480210 SRP68Q9UHB9 627 aaKnown RBP10.5□□□□□ -0.73
USP54-212ENST00000480210 PI4KAP2A4QPH2 592 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 ZBTB7AO95365 584 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 NFIXQ14938 502 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 HLFQ16534 295 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 PI4KAP1Q8N8J0 262 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.49□□□□□ -0.73
USP54-212ENST00000480210 CCDC191Q8NCU4 936 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 DNAAF4Q8WXU2 420 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 BCL11AQ9H165 835 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 ZBTB3Q9H5J0 574 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 NIP7Q9Y221 180 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-212ENST00000480210 ATF5Q9Y2D1 282 aaPredicted RBP10.49□□□□□ -0.73
USP54-212ENST00000480210 CARMIL3Q8ND23 1372 aa10.49□□□□□ -0.73
USP54-212ENST00000480210 IBTKQ9P2D0 1353 aaPredicted RBP10.49□□□□□ -0.73
USP54-212ENST00000480210 LRP5O75197 1615 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 NRXN2Q9P2S2 1712 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 TCERG1O14776 1098 aaKnown RBP10.48□□□□□ -0.73
USP54-212ENST00000480210 MMP10P09238 476 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 TBC1D9BQ66K14 1250 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 SMIM5Q71RC9 77 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 G2E3Q7L622 706 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 SGIP1Q9BQI5 828 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 ISCA1Q9BUE6 129 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 PDGFDQ9GZP0 370 aaPredicted RBP10.48□□□□□ -0.73
USP54-212ENST00000480210 RCAN3Q9UKA8 241 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 MAP3K2Q9Y2U5 619 aa10.48□□□□□ -0.73
USP54-212ENST00000480210 KIF13BQ9NQT8 1826 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 POLRMTO00411 1230 aaKnown RBP10.47□□□□□ -0.73
USP54-212ENST00000480210 ALDH1L1O75891 902 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 SERPINB2P05120 415 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 PTGER2P43116 358 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 ZKSCAN2Q63HK3 967 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 LINS1Q8NG48 757 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 NOB1Q9ULX3 412 aaKnown RBP10.47□□□□□ -0.73
USP54-212ENST00000480210 HDAC5Q9UQL6 1122 aa10.47□□□□□ -0.73
USP54-212ENST00000480210 NPHP1O15259 732 aa10.46□□□□□ -0.73
USP54-212ENST00000480210 GTF2E1P29083 439 aaPredicted RBP10.46□□□□□ -0.73
USP54-212ENST00000480210 ST5P78524 1137 aa10.46□□□□□ -0.73
USP54-212ENST00000480210 NBPF5PQ86XG9 351 aaPredicted RBP10.46□□□□□ -0.73
USP54-212ENST00000480210 MYD88Q99836 296 aa10.46□□□□□ -0.73
USP54-212ENST00000480210 UTP14AQ9BVJ6 771 aaKnown RBP10.46□□□□□ -0.73
USP54-212ENST00000480210 CWC25Q9NXE8 425 aaPredicted RBP10.46□□□□□ -0.73
USP54-212ENST00000480210 PPP1R1BQ9UD71 204 aaPredicted RBP10.46□□□□□ -0.73
USP54-212ENST00000480210 CD2APQ9Y5K6 639 aa10.46□□□□□ -0.73
USP54-212ENST00000480210 ADCY9O60503 1353 aa10.46□□□□□ -0.74
USP54-212ENST00000480210 PXDNLA1KZ92 1463 aa10.46□□□□□ -0.74
USP54-212ENST00000480210 N4BP2Q86UW6 1770 aaPredicted RBP10.45□□□□□ -0.74
USP54-212ENST00000480210 CCT4P50991 539 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms