RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 SKIV2LQ15477 1246 aaKnown RBP6.88□□□□□ -1.31
PTCD3-213ENST00000480102 Q6ZNB5 142 aa6.88□□□□□ -1.31
PTCD3-213ENST00000480102 NUTM2AQ8IVF1 878 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-213ENST00000480102 HIRIP3Q9BW71 556 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-213ENST00000480102 PKD2L1Q9P0L9 805 aa6.88□□□□□ -1.31
PTCD3-213ENST00000480102 USP32Q8NFA0 1604 aa6.87□□□□□ -1.31
PTCD3-213ENST00000480102 PPIP5K1Q6PFW1 1433 aa6.87□□□□□ -1.31
PTCD3-213ENST00000480102 USP31Q70CQ4 1352 aa6.87□□□□□ -1.31
PTCD3-213ENST00000480102 TNFRSF10AO00220 468 aa6.87□□□□□ -1.31
PTCD3-213ENST00000480102 RBM6P78332 1123 aaKnown RBP6.87□□□□□ -1.31
PTCD3-213ENST00000480102 SRPK2P78362 688 aaKnown RBP6.87□□□□□ -1.31
PTCD3-213ENST00000480102 SAFB2Q14151 953 aaKnown RBP eCLIP6.87□□□□□ -1.31
PTCD3-213ENST00000480102 NGLY1Q96IV0 654 aa6.87□□□□□ -1.31
PTCD3-213ENST00000480102 BCL9LQ86UU0 1499 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 USP47Q96K76 1375 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 TMF1P82094 1093 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 FOXC1Q12948 553 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 PTCRAQ6ISU1 281 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-213ENST00000480102 LYPD8Q6UX82 237 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 NLRP13Q86W25 1043 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 UNC5CLQ8IV45 518 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.86□□□□□ -1.31
PTCD3-213ENST00000480102 EVA1BQ9NVM1 165 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 TERF2IPQ9NYB0 399 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 CABP1Q9NZU7 370 aa6.86□□□□□ -1.31
PTCD3-213ENST00000480102 TRPC5Q9UL62 973 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-213ENST00000480102 ATRNO75882 1429 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 AFF2P51816 1311 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 TOPAZ1Q8N9V7 1692 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 ST20-MTHFSA0A0A6YYL1 179 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 RXRBP28702 533 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 VPS72Q15906 364 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 RTL5Q5HYW3 569 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-213ENST00000480102 POTEAQ6S8J7 498 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 KCNH5Q8NCM2 988 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 PMFBP1Q8TBY8 1022 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 CCER1Q8TC90 406 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-213ENST00000480102 TSC1Q92574 1164 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 DDX17Q92841 729 aaKnown RBP6.85□□□□□ -1.31
PTCD3-213ENST00000480102 ABCC6O95255 1503 aa6.85□□□□□ -1.31
PTCD3-213ENST00000480102 EDC4Q6P2E9 1401 aaKnown RBP6.84□□□□□ -1.31
PTCD3-213ENST00000480102 C11orf95C9JLR9 678 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-213ENST00000480102 WNT7AO00755 349 aa6.84□□□□□ -1.31
PTCD3-213ENST00000480102 WNT7BP56706 349 aa6.84□□□□□ -1.31
PTCD3-213ENST00000480102 KCNH2Q12809 1159 aa6.84□□□□□ -1.31
PTCD3-213ENST00000480102 MEX3CQ5U5Q3 659 aaKnown RBP6.84□□□□□ -1.31
PTCD3-213ENST00000480102 ILDR2Q71H61 639 aa6.84□□□□□ -1.31
PTCD3-213ENST00000480102 HELBQ8NG08 1087 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-213ENST00000480102 UNC93B1Q9H1C4 597 aa6.84□□□□□ -1.31
PTCD3-213ENST00000480102 KIF24Q5T7B8 1368 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 AATKQ6ZMQ8 1374 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 ANKRD36BQ8N2N9 1353 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 TTC21BQ7Z4L5 1316 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 PER1O15534 1290 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 F12P00748 615 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 GCP02774 474 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 EIF4G2P78344 907 aaKnown RBP eCLIP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 SKOR1P84550 965 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 TMEM132AQ24JP5 1023 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 PROCA1Q8NCQ7 364 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 QTRT2Q9H974 415 aaKnown RBP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 GOPCQ9HD26 462 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 USP21Q9UK80 565 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 ITSN1Q15811 1721 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 TRPM3Q9HCF6 1732 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-213ENST00000480102 CD163L1Q9NR16 1453 aa6.83□□□□□ -1.32
PTCD3-213ENST00000480102 PLEKHG2Q9H7P9 1386 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 SLIT3O75094 1523 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 ALS2Q96Q42 1657 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 LCE2BO14633 110 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 PPP2R2DQ66LE6 453 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 HDGFL2Q7Z4V5 671 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-213ENST00000480102 CCDC125Q86Z20 511 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 ABTB2Q8N961 1025 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 IL27Q8NEV9 243 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 GJD4Q96KN9 370 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-213ENST00000480102 C8orf37Q96NL8 207 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 TOR4AQ9NXH8 423 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 MAP10Q9P2G4 905 aa6.82□□□□□ -1.32
PTCD3-213ENST00000480102 THRAP3Q9Y2W1 955 aaKnown RBP6.82□□□□□ -1.32
PTCD3-213ENST00000480102 KTN1Q86UP2 1357 aaKnown RBP6.82□□□□□ -1.32
PTCD3-213ENST00000480102 FAM83GA6ND36 823 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 ADAMTS2O95450 1211 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 CTHP32929 405 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 XPCQ01831 940 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-213ENST00000480102 PKDCCQ504Y2 493 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 MRGPRX2Q96LB1 330 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 A0A1W2PP64 1363 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 QRICH2Q9H0J4 1663 aa6.81□□□□□ -1.32
PTCD3-213ENST00000480102 OVOS2A0A0J9YW53 1432 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 FAM187AA6NFU0 413 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 DGAT1O75907 488 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 SH3BP2P78314 561 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 RC3H1Q5TC82 1133 aaKnown RBP6.8□□□□□ -1.32
PTCD3-213ENST00000480102 OVOS2Q6IE36 1432 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 TRAF7Q6Q0C0 670 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 ARHGEF25Q86VW2 580 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 CYP4X1Q8N118 509 aa6.8□□□□□ -1.32
PTCD3-213ENST00000480102 CDCA7Q9BWT1 371 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-213ENST00000480102 PRDM11Q9NQV5 511 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms