RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 UBTFL1P0CB47 393 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 DLG5Q8TDM6 1919 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 PTPN14Q15678 1187 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 ME3Q16798 604 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 FILIP1Q7Z7B0 1213 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 SPATA32Q96LK8 384 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 KIDINS220Q9ULH0 1771 aa22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 ZNF397Q8NF99 534 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 TCEANC2Q96MN5 208 aa22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 CYP46A1Q9Y6A2 500 aa22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 ASXL2Q76L83 1435 aa22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 IRX5P78411 483 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-207ENST00000479965 IL17RAQ96F46 866 aa22.24■■□□□ 1.15
CCDC88B-207ENST00000479965 GOLGA6L19H0YKK7 550 aa22.24■■□□□ 1.15
CCDC88B-207ENST00000479965 PTH1RQ03431 593 aa22.24■■□□□ 1.15
CCDC88B-207ENST00000479965 PLA2G4DQ86XP0 818 aa22.24■■□□□ 1.15
CCDC88B-207ENST00000479965 FBXO38Q6PIJ6 1188 aa22.23■■□□□ 1.15
CCDC88B-207ENST00000479965 CDK12Q9NYV4 1490 aaPredicted RBP22.23■■□□□ 1.15
CCDC88B-207ENST00000479965 PLCD3Q8N3E9 789 aa22.23■■□□□ 1.15
CCDC88B-207ENST00000479965 TIGD1Q96MW7 591 aa22.23■■□□□ 1.15
CCDC88B-207ENST00000479965 KIF20BQ96Q89 1820 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 NR1I2O75469 434 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 OS9Q13438 667 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 HSP90AB2PQ58FF8 381 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 PPP1R42Q7Z4L9 355 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 PI4K2BQ8TCG2 481 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 RHPN1Q8TCX5 695 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 UHRF1BP1LA0JNW5 1464 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 SOS1Q07889 1333 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 STK3Q13188 491 aa22.22■■□□□ 1.15
CCDC88B-207ENST00000479965 ABCA9Q8IUA7 1624 aa22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 SKILP12757 684 aa22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 FBXW7Q969H0 707 aa22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 ST3GAL1Q11201 340 aa22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 SYTL4Q96C24 671 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 ZSCAN31Q96LW9 406 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 SH2B1Q9NRF2 756 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 SLC52A1Q9NWF4 448 aa22.21■■□□□ 1.15
CCDC88B-207ENST00000479965 SRGAP3O43295 1099 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 CEBPZQ03701 1054 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 VPS53Q5VIR6 699 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 LRRC8AQ8IWT6 810 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 TPCN1Q9ULQ1 816 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 USP16Q9Y5T5 823 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 RAPGEF3O95398 923 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 USP44Q9H0E7 712 aa22.2■■□□□ 1.14
CCDC88B-207ENST00000479965 RAB11FIP3O75154 756 aa22.19■■□□□ 1.14
CCDC88B-207ENST00000479965 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-207ENST00000479965 TDRD7Q8NHU6 1098 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-207ENST00000479965 DDX19AQ9NUU7 478 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-207ENST00000479965 A0A087WWV3 80 aa22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 NUTM2FA1L443 756 aa22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 EPB41L2O43491 1005 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 ZKSCAN1P17029 563 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 GTF3C6Q969F1 213 aa22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 RBM6P78332 1123 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-207ENST00000479965 FBXO31Q5XUX0 539 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 BECN2A8MW95 431 aa22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 MTHFSDQ2M296 383 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 CCDC30Q5VVM6 783 aa22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 NUDT16Q96DE0 195 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 SCAND2PQ9GZW5 306 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 CLSTN2Q9H4D0 955 aa22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 AOX1Q06278 1338 aa22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 EDC4Q6P2E9 1401 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 COL9A3Q14050 684 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 LARP1Q6PKG0 1096 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-207ENST00000479965 LEO1Q8WVC0 666 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-207ENST00000479965 AATKQ6ZMQ8 1374 aa22.16■■□□□ 1.14
CCDC88B-207ENST00000479965 CCDC171Q6TFL3 1326 aa22.16■■□□□ 1.14
CCDC88B-207ENST00000479965 NPHP3Q7Z494 1330 aa22.16■■□□□ 1.14
CCDC88B-207ENST00000479965 RUFY2Q8WXA3 655 aa22.16■■□□□ 1.14
CCDC88B-207ENST00000479965 CCDC69A6NI79 296 aa22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 WASLO00401 505 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 KIF1BPQ96EK5 621 aa22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 DDX11Q96FC9 970 aa22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 ZSWIM6Q9HCJ5 1215 aa22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 ERO1AQ96HE7 468 aa22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 NOL10Q9BSC4 688 aaKnown RBP22.15■■□□□ 1.14
CCDC88B-207ENST00000479965 PDCP20941 246 aa22.14■■□□□ 1.14
CCDC88B-207ENST00000479965 TXNDC2Q86VQ3 553 aa22.14■■□□□ 1.14
CCDC88B-207ENST00000479965 CALCOCO1Q9P1Z2 691 aa22.14■■□□□ 1.14
CCDC88B-207ENST00000479965 PPP6R1Q9UPN7 881 aa22.14■■□□□ 1.14
CCDC88B-207ENST00000479965 SLU7O95391 586 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-207ENST00000479965 SSH3Q8TE77 659 aa22.14■■□□□ 1.13
CCDC88B-207ENST00000479965 ATP7BP35670 1465 aa22.14■■□□□ 1.13
CCDC88B-207ENST00000479965 FOSBP53539 338 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 ERCC6LQ2NKX8 1250 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 ELP1O95163 1332 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 GORABQ5T7V8 394 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 C11orf57Q6ZUT1 292 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 CRB1P82279 1406 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 FRMPD1Q5SYB0 1578 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 PGBD1Q96JS3 809 aa22.13■■□□□ 1.13
CCDC88B-207ENST00000479965 KLHL34Q8N239 644 aa22.12■■□□□ 1.13
CCDC88B-207ENST00000479965 PHAXQ9H814 394 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-207ENST00000479965 RBM8AQ9Y5S9 174 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-207ENST00000479965 SIGLEC1Q9BZZ2 1709 aa22.12■■□□□ 1.13
CCDC88B-207ENST00000479965 CCDC61Q9Y6R9 512 aa22.11■■□□□ 1.13
CCDC88B-207ENST00000479965 ZNF446Q9NWS9 450 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms