RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 CNTNAP1P78357 1384 aa13.36□□□□□ -0.27
GPNMB-211ENST00000479625 SIPA1L3O60292 1781 aaPredicted RBP13.36□□□□□ -0.27
GPNMB-211ENST00000479625 CYP19A1P11511 503 aaPredicted RBP13.36□□□□□ -0.27
GPNMB-211ENST00000479625 VASPP50552 380 aaPredicted RBP13.36□□□□□ -0.27
GPNMB-211ENST00000479625 SLC34A2O95436 690 aa13.35□□□□□ -0.27
GPNMB-211ENST00000479625 SLC39A6Q13433 755 aa13.35□□□□□ -0.27
GPNMB-211ENST00000479625 BICDL1Q6ZP65 573 aa13.35□□□□□ -0.27
GPNMB-211ENST00000479625 H0YIN7 160 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 C21orf2O43822 256 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 NUBP1P53384 320 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 ERFEQ4G0M1 354 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 SULT6B1Q6IMI4 303 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 CCDC24Q8N4L8 307 aa13.34□□□□□ -0.27
GPNMB-211ENST00000479625 THSD7BQ9C0I4 1608 aa13.33□□□□□ -0.28
GPNMB-211ENST00000479625 DDNO94850 711 aaPredicted RBP13.33□□□□□ -0.28
GPNMB-211ENST00000479625 DPY19L2Q6NUT2 758 aa13.33□□□□□ -0.28
GPNMB-211ENST00000479625 ZNF622Q969S3 477 aaKnown RBP eCLIP13.33□□□□□ -0.28
GPNMB-211ENST00000479625 SLC52A2Q9HAB3 445 aa13.33□□□□□ -0.28
GPNMB-211ENST00000479625 LGR6Q9HBX8 967 aa13.33□□□□□ -0.28
GPNMB-211ENST00000479625 PASKQ96RG2 1323 aa13.32□□□□□ -0.28
GPNMB-211ENST00000479625 CANXP27824 592 aaKnown RBP13.31□□□□□ -0.28
GPNMB-211ENST00000479625 PRDM10Q9NQV6 1147 aa13.31□□□□□ -0.28
GPNMB-211ENST00000479625 VEGFBP49765 207 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 AKAP4Q5JQC9 854 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 TBC1D9BQ66K14 1250 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 FAM212AQ96EL1 285 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 KIF12Q96FN5 646 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 TAOK3Q9H2K8 898 aa13.3□□□□□ -0.28
GPNMB-211ENST00000479625 TNRC18O15417 2968 aaPredicted RBP13.29□□□□□ -0.28
GPNMB-211ENST00000479625 CTCFP49711 727 aaPredicted RBP13.29□□□□□ -0.28
GPNMB-211ENST00000479625 LBX1P52954 281 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 FAM161AQ3B820 660 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 LHX8Q68G74 356 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 PRR5LQ6MZQ0 368 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 AIDAQ96BJ3 306 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 LTBP3Q9NS15 1303 aa13.29□□□□□ -0.28
GPNMB-211ENST00000479625 RNMTO43148 476 aaKnown RBP13.28□□□□□ -0.28
GPNMB-211ENST00000479625 IL13P35225 146 aa13.28□□□□□ -0.28
GPNMB-211ENST00000479625 LTBP1Q14766 1721 aa13.27□□□□□ -0.28
GPNMB-211ENST00000479625 MAP3K13O43283 966 aa13.27□□□□□ -0.29
GPNMB-211ENST00000479625 PDE6BP35913 854 aa13.27□□□□□ -0.29
GPNMB-211ENST00000479625 EIF5P55010 431 aaKnown RBP13.27□□□□□ -0.29
GPNMB-211ENST00000479625 PRPF40BQ6NWY9 871 aaKnown RBP13.27□□□□□ -0.29
GPNMB-211ENST00000479625 LDHDQ86WU2 507 aa13.27□□□□□ -0.29
GPNMB-211ENST00000479625 BRIP1Q9BX63 1249 aa13.27□□□□□ -0.29
GPNMB-211ENST00000479625 TAF1DQ9H5J8 278 aaPredicted RBP13.27□□□□□ -0.29
GPNMB-211ENST00000479625 ZNF330Q9Y3S2 320 aaPredicted RBP13.27□□□□□ -0.29
GPNMB-211ENST00000479625 TRPM7Q96QT4 1865 aa13.27□□□□□ -0.29
GPNMB-211ENST00000479625 HMOX1P09601 288 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 HSPA8P11142 646 aaKnown RBP13.26□□□□□ -0.29
GPNMB-211ENST00000479625 EAPPQ56P03 285 aaPredicted RBP13.26□□□□□ -0.29
GPNMB-211ENST00000479625 MORC1Q86VD1 984 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 ABHD8Q96I13 439 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 ZNF541Q9H0D2 1346 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 PANK3Q9H999 370 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 WBP1LQ9NX94 342 aa13.26□□□□□ -0.29
GPNMB-211ENST00000479625 IQCA1LA6NCM1 817 aa13.25□□□□□ -0.29
GPNMB-211ENST00000479625 TMEM88BA6NKF7 163 aa13.25□□□□□ -0.29
GPNMB-211ENST00000479625 ITGBL1O95965 494 aaPredicted RBP13.25□□□□□ -0.29
GPNMB-211ENST00000479625 VSIG10Q8N0Z9 540 aa13.25□□□□□ -0.29
GPNMB-211ENST00000479625 TBC1D2BQ9UPU7 963 aa13.25□□□□□ -0.29
GPNMB-211ENST00000479625 CNBD1Q8NA66 436 aa13.24□□□□□ -0.29
GPNMB-211ENST00000479625 L3MBTL3Q96JM7 780 aaPredicted RBP13.24□□□□□ -0.29
GPNMB-211ENST00000479625 SRGNP10124 158 aa13.23□□□□□ -0.29
GPNMB-211ENST00000479625 MTHFSDQ2M296 383 aaKnown RBP13.23□□□□□ -0.29
GPNMB-211ENST00000479625 PDZRN3Q9UPQ7 1066 aa13.23□□□□□ -0.29
GPNMB-211ENST00000479625 COL4A5P29400 1685 aa13.23□□□□□ -0.29
GPNMB-211ENST00000479625 HEG1Q9ULI3 1381 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 RNF123Q5XPI4 1314 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 A0A087WZG4 1122 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 RASSF10A6NK89 507 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 NPHP1O15259 732 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 STARD3NLO95772 234 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 MAP1SQ66K74 1059 aaPredicted RBP13.22□□□□□ -0.29
GPNMB-211ENST00000479625 STYK1Q6J9G0 422 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 OLFM4Q6UX06 510 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 TTC5Q8N0Z6 440 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 CNKSR1Q969H4 720 aa13.22□□□□□ -0.29
GPNMB-211ENST00000479625 ZNF496Q96IT1 587 aaPredicted RBP13.22□□□□□ -0.29
GPNMB-211ENST00000479625 ST5P78524 1137 aa13.21□□□□□ -0.29
GPNMB-211ENST00000479625 MASTLQ96GX5 879 aa13.21□□□□□ -0.29
GPNMB-211ENST00000479625 ZNF277Q9NRM2 450 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-211ENST00000479625 TRPC6Q9Y210 931 aa13.21□□□□□ -0.29
GPNMB-211ENST00000479625 LAMB4A4D0S4 1761 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 WDR33Q9C0J8 1336 aaKnown RBP13.2□□□□□ -0.3
GPNMB-211ENST00000479625 CAMTA2O94983 1202 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 EPHX2P34913 555 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 CCDC93Q567U6 631 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 DCAF8Q5TAQ9 597 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 SOGA3Q5TF21 947 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 SETDB2Q96T68 719 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 HACL1Q9UJ83 578 aa13.2□□□□□ -0.3
GPNMB-211ENST00000479625 ATMINO43313 823 aaPredicted RBP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 A1BGP04217 495 aa13.19□□□□□ -0.3
GPNMB-211ENST00000479625 IL6STP40189 918 aaPredicted RBP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 PIP4K2AP48426 406 aaPredicted RBP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 FKBP4Q02790 459 aaKnown RBP eCLIP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 FMR1Q06787 632 aaKnown RBP eCLIP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 DEFB115Q30KQ5 88 aa13.19□□□□□ -0.3
GPNMB-211ENST00000479625 ASTLQ6HA08 431 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms