RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TSR1Q2NL82 804 aaKnown RBP15.88■□□□□ 0.13
USP42-206ENST00000479544 DDX58O95786 925 aaKnown RBP15.88■□□□□ 0.13
USP42-206ENST00000479544 LEKR1Q6ZMV7 388 aa15.88■□□□□ 0.13
USP42-206ENST00000479544 SOCS7O14512 581 aa15.88■□□□□ 0.13
USP42-206ENST00000479544 FOXO3O43524 673 aa15.88■□□□□ 0.13
USP42-206ENST00000479544 CHMLP26374 656 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 HSP90AB2PQ58FF8 381 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 NOL10Q9BSC4 688 aaKnown RBP15.87■□□□□ 0.13
USP42-206ENST00000479544 ZNF396Q96N95 335 aaPredicted RBP15.87■□□□□ 0.13
USP42-206ENST00000479544 GTPBP4Q9BZE4 634 aaKnown RBP15.87■□□□□ 0.13
USP42-206ENST00000479544 ABCC1P33527 1531 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 FAM193AP78312 1265 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 FSIP1Q8NA03 581 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 CCDC102AQ96A19 550 aa15.87■□□□□ 0.13
USP42-206ENST00000479544 ZNF692Q9BU19 519 aaPredicted RBP15.87■□□□□ 0.13
USP42-206ENST00000479544 ATP7AQ04656 1500 aa15.86■□□□□ 0.13
USP42-206ENST00000479544 IBSPP21815 317 aaPredicted RBP15.86■□□□□ 0.13
USP42-206ENST00000479544 ANKRD1Q15327 319 aa15.86■□□□□ 0.13
USP42-206ENST00000479544 CWC15Q9P013 229 aaKnown RBP15.86■□□□□ 0.13
USP42-206ENST00000479544 ABTB2Q8N961 1025 aa15.86■□□□□ 0.13
USP42-206ENST00000479544 SNW1Q13573 536 aaKnown RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 AXDND1Q5T1B0 1012 aaPredicted RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 POLR3DP05423 398 aaPredicted RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 ERCC4Q92889 916 aaPredicted RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 TIGD1Q96MW7 591 aa15.85■□□□□ 0.13
USP42-206ENST00000479544 RHPN1Q8TCX5 695 aa15.85■□□□□ 0.13
USP42-206ENST00000479544 CCDC85AQ96PX6 553 aaPredicted RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 PSME1Q06323 249 aa15.85■□□□□ 0.13
USP42-206ENST00000479544 SH2B1Q9NRF2 756 aaPredicted RBP15.85■□□□□ 0.13
USP42-206ENST00000479544 CALCOCO1Q9P1Z2 691 aa15.85■□□□□ 0.13
USP42-206ENST00000479544 DNAI1Q9UI46 699 aa15.85■□□□□ 0.13
USP42-206ENST00000479544 KDM5CP41229 1560 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 PROSER2Q86WR7 435 aaPredicted RBP15.84■□□□□ 0.13
USP42-206ENST00000479544 CPLX3Q8WVH0 158 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 CHMP4CQ96CF2 233 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 PYCARDQ9ULZ3 195 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 AK7Q96M32 723 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 DDX19AQ9NUU7 478 aaKnown RBP15.84■□□□□ 0.13
USP42-206ENST00000479544 USP16Q9Y5T5 823 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 TERF1P54274 439 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 AKAP17AQ02040 695 aaKnown RBP15.84■□□□□ 0.13
USP42-206ENST00000479544 INSRP06213 1382 aa15.84■□□□□ 0.13
USP42-206ENST00000479544 PI4KAP2A4QPH2 592 aa15.83■□□□□ 0.13
USP42-206ENST00000479544 PI4KAP1Q8N8J0 262 aa15.83■□□□□ 0.13
USP42-206ENST00000479544 ANO10Q9NW15 660 aa15.83■□□□□ 0.13
USP42-206ENST00000479544 ANKRD36BQ8N2N9 1353 aa15.83■□□□□ 0.13
USP42-206ENST00000479544 DIP2CQ9Y2E4 1556 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 H0YHG0 523 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 BRD1O95696 1058 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 LMAN1P49257 510 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 NOM1Q5C9Z4 860 aaKnown RBP15.83■□□□□ 0.12
USP42-206ENST00000479544 TAF3Q5VWG9 929 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 CCAR1Q8IX12 1150 aaKnown RBP15.83■□□□□ 0.12
USP42-206ENST00000479544 IPO7O95373 1038 aaKnown RBP15.83■□□□□ 0.12
USP42-206ENST00000479544 RNF216Q9NWF9 866 aaPredicted RBP15.83■□□□□ 0.12
USP42-206ENST00000479544 PA2G4Q9UQ80 394 aaKnown RBP15.83■□□□□ 0.12
USP42-206ENST00000479544 PREX1Q8TCU6 1659 aa15.83■□□□□ 0.12
USP42-206ENST00000479544 FKBP4Q02790 459 aaKnown RBP eCLIP15.82■□□□□ 0.12
USP42-206ENST00000479544 RRP12Q5JTH9 1297 aaKnown RBP15.82■□□□□ 0.12
USP42-206ENST00000479544 MEX3CQ5U5Q3 659 aaKnown RBP15.82■□□□□ 0.12
USP42-206ENST00000479544 CCDC82Q8N4S0 544 aa15.82■□□□□ 0.12
USP42-206ENST00000479544 TTC5Q8N0Z6 440 aa15.82■□□□□ 0.12
USP42-206ENST00000479544 PAXBP1Q9Y5B6 917 aa15.82■□□□□ 0.12
USP42-206ENST00000479544 SIRT2Q8IXJ6 389 aa15.82■□□□□ 0.12
USP42-206ENST00000479544 AOPEPQ8N6M6 819 aa15.82■□□□□ 0.12
USP42-206ENST00000479544 CCDC69A6NI79 296 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 KLHL10Q6JEL2 608 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 BRF1Q92994 677 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 MBD5Q9P267 1494 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 NSD2O96028 1365 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 HIP1O00291 1037 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 CAGE1Q8TC20 777 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 RBM8AQ9Y5S9 174 aaKnown RBP15.81■□□□□ 0.12
USP42-206ENST00000479544 LMOD1P29536 600 aaPredicted RBP15.81■□□□□ 0.12
USP42-206ENST00000479544 ELF2Q15723 593 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 SYT10Q6XYQ8 523 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 MTMR7Q9Y216 660 aa15.81■□□□□ 0.12
USP42-206ENST00000479544 PNMA6EA0A0J9YXQ4 647 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 ECHDC1Q9NTX5 307 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 NPC1L1Q9UHC9 1359 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 WASLO00401 505 aaPredicted RBP15.8■□□□□ 0.12
USP42-206ENST00000479544 ZNF530Q6P9A1 599 aaPredicted RBP15.8■□□□□ 0.12
USP42-206ENST00000479544 INTS4Q96HW7 963 aaKnown RBP15.8■□□□□ 0.12
USP42-206ENST00000479544 PREX2Q70Z35 1606 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 PTPRCP08575 1304 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 BMS1Q14692 1282 aaKnown RBP15.8■□□□□ 0.12
USP42-206ENST00000479544 ARHGAP29Q52LW3 1261 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 OGFRQ9NZT2 677 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 NAP1L1P55209 391 aaKnown RBP15.8■□□□□ 0.12
USP42-206ENST00000479544 ANAPC15P60006 121 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 ERC1Q8IUD2 1116 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 NRBP1Q9UHY1 535 aa15.8■□□□□ 0.12
USP42-206ENST00000479544 MCM6Q14566 821 aa15.79■□□□□ 0.12
USP42-206ENST00000479544 SAFBQ15424 915 aaKnown RBP eCLIP15.79■□□□□ 0.12
USP42-206ENST00000479544 SAMD9LQ8IVG5 1584 aa15.79■□□□□ 0.12
USP42-206ENST00000479544 GNG11P61952 73 aa15.79■□□□□ 0.12
USP42-206ENST00000479544 HOOK1Q9UJC3 728 aaKnown RBP15.79■□□□□ 0.12
USP42-206ENST00000479544 MSH6P52701 1360 aa15.79■□□□□ 0.12
USP42-206ENST00000479544 CAMSAP1Q5T5Y3 1602 aa15.79■□□□□ 0.12
USP42-206ENST00000479544 KIF20AO95235 890 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms