RNA–Protein interactions for RNA: ENST00000475973.1

UBR4-212, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 600 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-212ENST00000475973 USP54Q70EL1 1684 aa8.56□□□□□ -1.04
UBR4-212ENST00000475973 DDX11L8A8MPP1 907 aa8.55□□□□□ -1.04
UBR4-212ENST00000475973 PLSCR1O15162 318 aa8.55□□□□□ -1.04
UBR4-212ENST00000475973 TRAK2O60296 914 aa8.55□□□□□ -1.04
UBR4-212ENST00000475973 EIF5BO60841 1220 aaKnown RBP8.55□□□□□ -1.04
UBR4-212ENST00000475973 CYP2E1P05181 493 aaPredicted RBP8.55□□□□□ -1.04
UBR4-212ENST00000475973 CLCN1P35523 988 aa8.55□□□□□ -1.04
UBR4-212ENST00000475973 MRE11P49959 708 aa8.55□□□□□ -1.04
UBR4-212ENST00000475973 INTS3Q68E01 1043 aaKnown RBP8.55□□□□□ -1.04
UBR4-212ENST00000475973 MARCH10Q8NA82 808 aaPredicted RBP8.55□□□□□ -1.04
UBR4-212ENST00000475973 SLKQ9H2G2 1235 aaPredicted RBP8.55□□□□□ -1.04
UBR4-212ENST00000475973 ATP10DQ9P241 1426 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 COL18A1P39060 1754 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 HAX1O00165 279 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 ZMYND10O75800 440 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 PTMSP20962 102 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 AMPHP49418 695 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 GNAI1P63096 354 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 EVX2Q03828 476 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 MICALL2Q8IY33 904 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 PDCD7Q8N8D1 485 aaKnown RBP8.54□□□□□ -1.04
UBR4-212ENST00000475973 IP6K1Q92551 441 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 PHACTR3Q96KR7 559 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 DCTPP1Q9H773 170 aa8.54□□□□□ -1.04
UBR4-212ENST00000475973 ATN1P54259 1190 aaPredicted RBP8.53□□□□□ -1.04
UBR4-212ENST00000475973 ITPRIPQ8IWB1 547 aa8.53□□□□□ -1.04
UBR4-212ENST00000475973 LTV1Q96GA3 475 aaPredicted RBP8.53□□□□□ -1.04
UBR4-212ENST00000475973 MAP3K19Q56UN5 1328 aa8.53□□□□□ -1.04
UBR4-212ENST00000475973 RREB1Q92766 1687 aa8.53□□□□□ -1.04
UBR4-212ENST00000475973 PEAK1Q9H792 1746 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 GOLGA6L3A6NEY3 463 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 U2SURPO15042 1029 aaKnown RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 HOXC9P31274 260 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 PRKAR2BP31323 418 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 IRX5P78411 483 aaPredicted RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 FOXK1P85037 733 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 DSG2Q14126 1118 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 SKOR2Q2VWA4 1001 aaPredicted RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 TSPYL6Q8N831 410 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 TMEM121BQ9BXQ6 578 aaPredicted RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 API5Q9BZZ5 524 aaKnown RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 OSBPL3Q9H4L5 887 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 SLC24A3Q9HC58 644 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 SPON1Q9HCB6 807 aa8.52□□□□□ -1.05
UBR4-212ENST00000475973 PPP1R1BQ9UD71 204 aaPredicted RBP8.52□□□□□ -1.05
UBR4-212ENST00000475973 CHL1O00533 1208 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 ATMINO43313 823 aaPredicted RBP8.51□□□□□ -1.05
UBR4-212ENST00000475973 MFAP1P55081 439 aaKnown RBP8.51□□□□□ -1.05
UBR4-212ENST00000475973 LMOD3Q0VAK6 560 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 IER5LQ5T953 404 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 ASTLQ6HA08 431 aaPredicted RBP8.51□□□□□ -1.05
UBR4-212ENST00000475973 TBC1D9Q6ZT07 1266 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 PLEKHM2Q8IWE5 1019 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 HSCBQ8IWL3 235 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 TNPO1Q92973 898 aaKnown RBP8.51□□□□□ -1.05
UBR4-212ENST00000475973 PPP1R9BQ96SB3 815 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 OCEL1Q9H607 264 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 MBIPQ9NS73 344 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 EMILIN3Q9NT22 766 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 STK32BQ9NY57 414 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 MAP2P11137 1827 aaKnown RBP8.51□□□□□ -1.05
UBR4-212ENST00000475973 WNK3Q9BYP7 1800 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 NUP188Q5SRE5 1749 aa8.51□□□□□ -1.05
UBR4-212ENST00000475973 RGPD3A6NKT7 1758 aaPredicted RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 RGPD4Q7Z3J3 1758 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 FLT4P35916 1363 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 K7ELQ4 463 aaPredicted RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 CD2BP2O95400 341 aaKnown RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 GSPT1P15170 499 aaKnown RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 MLLT3P42568 568 aaPredicted RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 TXNRD1Q16881 649 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 RPAP2Q8IXW5 612 aaPredicted RBP8.5□□□□□ -1.05
UBR4-212ENST00000475973 ANKRD44Q8N8A2 993 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 TMC2Q8TDI7 906 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 ACSBG1Q96GR2 724 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 DLG5Q8TDM6 1919 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 SALL3Q9BXA9 1300 aa8.5□□□□□ -1.05
UBR4-212ENST00000475973 FAM208AQ9UK61 1670 aaKnown RBP8.49□□□□□ -1.05
UBR4-212ENST00000475973 SPDYE16A6NNV3 312 aaPredicted RBP8.49□□□□□ -1.05
UBR4-212ENST00000475973 KCNQ2O43526 872 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 RRS1Q15050 365 aaKnown RBP8.49□□□□□ -1.05
UBR4-212ENST00000475973 C8orf58Q8NAV2 365 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 RAPGEF4Q8WZA2 1011 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 USP26Q9BXU7 913 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 LNPKQ9C0E8 428 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 GRPEL1Q9HAV7 217 aa8.49□□□□□ -1.05
UBR4-212ENST00000475973 DPYSL4O14531 572 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 EPB41L2O43491 1005 aaKnown RBP8.48□□□□□ -1.05
UBR4-212ENST00000475973 CDC45O75419 566 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 ZNF445P59923 1031 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 TWISTNBQ3B726 338 aaPredicted RBP8.48□□□□□ -1.05
UBR4-212ENST00000475973 RBM26Q5T8P6 1007 aaKnown RBP8.48□□□□□ -1.05
UBR4-212ENST00000475973 PTF1AQ7RTS3 328 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 GAS2L3Q86XJ1 694 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 DDX54Q8TDD1 881 aaKnown RBP8.48□□□□□ -1.05
UBR4-212ENST00000475973 BOLA1Q9Y3E2 137 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 PTPRCP08575 1304 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 KDRP35968 1356 aa8.48□□□□□ -1.05
UBR4-212ENST00000475973 NHSQ6T4R5 1651 aa8.47□□□□□ -1.05
UBR4-212ENST00000475973 KIF3CO14782 793 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms