RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 C9orf78Q9NZ63 289 aaPredicted RBP12.06□□□□□ -0.48
USP39-214ENST00000474572 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.06□□□□□ -0.48
USP39-214ENST00000474572 REC8O95072 547 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 RABEP1Q15276 862 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 COPS6Q7L5N1 327 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 RIC3Q7Z5B4 369 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 ERC1Q8IUD2 1116 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 CHMP5Q9NZZ3 219 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 TTC41PQ6P2S7 1318 aa12.05□□□□□ -0.48
USP39-214ENST00000474572 CICQ96RK0 1608 aaPredicted RBP12.04□□□□□ -0.48
USP39-214ENST00000474572 K7ELQ4 463 aaPredicted RBP12.04□□□□□ -0.48
USP39-214ENST00000474572 NEXNQ0ZGT2 675 aa12.04□□□□□ -0.48
USP39-214ENST00000474572 GCKRQ14397 625 aa12.04□□□□□ -0.48
USP39-214ENST00000474572 ANKRD13DQ6ZTN6 518 aa12.04□□□□□ -0.48
USP39-214ENST00000474572 ESYT1Q9BSJ8 1104 aa12.04□□□□□ -0.48
USP39-214ENST00000474572 SLKQ9H2G2 1235 aaPredicted RBP12.04□□□□□ -0.48
USP39-214ENST00000474572 CIZ1Q9ULV3 898 aaPredicted RBP12.04□□□□□ -0.48
USP39-214ENST00000474572 CD2BP2O95400 341 aaKnown RBP12.03□□□□□ -0.48
USP39-214ENST00000474572 MYL6BP14649 208 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 CHMLP26374 656 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 AIMP1Q12904 312 aaKnown RBP12.03□□□□□ -0.48
USP39-214ENST00000474572 PLBD2Q8NHP8 589 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 BICC1Q9H694 974 aaKnown RBP12.03□□□□□ -0.48
USP39-214ENST00000474572 IL1RAPL2Q9NP60 686 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 PHLPP1O60346 1717 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 NWD2Q9ULI1 1742 aa12.03□□□□□ -0.48
USP39-214ENST00000474572 NBPF26B4DH59 902 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 FRAT2O75474 233 aaPredicted RBP12.02□□□□□ -0.49
USP39-214ENST00000474572 CASP7P55210 303 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 RABL6Q3YEC7 729 aaPredicted RBP12.02□□□□□ -0.49
USP39-214ENST00000474572 NBPF14Q5TI25 921 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 TSHZ3Q63HK5 1081 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 NBPF10Q6P3W6 841 aaKnown RBP12.02□□□□□ -0.49
USP39-214ENST00000474572 UNC5CLQ8IV45 518 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 NBPF15Q8N660 670 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 MYD88Q99836 296 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 ANKRD36CQ5JPF3 1778 aa12.02□□□□□ -0.49
USP39-214ENST00000474572 DOT1LQ8TEK3 1739 aa12.01□□□□□ -0.49
USP39-214ENST00000474572 DEKP35659 375 aaKnown RBP12.01□□□□□ -0.49
USP39-214ENST00000474572 NUTM1Q86Y26 1132 aa12.01□□□□□ -0.49
USP39-214ENST00000474572 IL27Q8NEV9 243 aa12.01□□□□□ -0.49
USP39-214ENST00000474572 RBM42Q9BTD8 480 aaKnown RBP12.01□□□□□ -0.49
USP39-214ENST00000474572 STRN4Q9NRL3 753 aa12.01□□□□□ -0.49
USP39-214ENST00000474572 GLRX3O76003 335 aaKnown RBP12□□□□□ -0.49
USP39-214ENST00000474572 SASH1O94885 1247 aa12□□□□□ -0.49
USP39-214ENST00000474572 RFX5P48382 616 aaPredicted RBP12□□□□□ -0.49
USP39-214ENST00000474572 EVA1CP58658 441 aa12□□□□□ -0.49
USP39-214ENST00000474572 ANAPC15P60006 121 aa12□□□□□ -0.49
USP39-214ENST00000474572 CLASRPQ8N2M8 674 aaKnown RBP12□□□□□ -0.49
USP39-214ENST00000474572 COPRSQ9NQ92 184 aa12□□□□□ -0.49
USP39-214ENST00000474572 EPHA10Q5JZY3 1008 aa11.99□□□□□ -0.49
USP39-214ENST00000474572 VSIG10Q8N0Z9 540 aa11.99□□□□□ -0.49
USP39-214ENST00000474572 CNTROBQ8N137 903 aa11.99□□□□□ -0.49
USP39-214ENST00000474572 BTG4Q9NY30 223 aa11.99□□□□□ -0.49
USP39-214ENST00000474572 PA2G4Q9UQ80 394 aaKnown RBP11.99□□□□□ -0.49
USP39-214ENST00000474572 RREB1Q92766 1687 aa11.99□□□□□ -0.49
USP39-214ENST00000474572 BCL9O00512 1426 aa11.98□□□□□ -0.49
USP39-214ENST00000474572 TRIM6-TRIM34B2RNG4 842 aa11.98□□□□□ -0.49
USP39-214ENST00000474572 H7C1W4 665 aa11.98□□□□□ -0.49
USP39-214ENST00000474572 RILPL2Q969X0 211 aa11.98□□□□□ -0.49
USP39-214ENST00000474572 ECHDC1Q9NTX5 307 aa11.98□□□□□ -0.49
USP39-214ENST00000474572 SGSM2O43147 1006 aa11.97□□□□□ -0.49
USP39-214ENST00000474572 PIP4K2AP48426 406 aaPredicted RBP11.97□□□□□ -0.49
USP39-214ENST00000474572 OS9Q13438 667 aaPredicted RBP11.97□□□□□ -0.49
USP39-214ENST00000474572 RAB3GAP1Q15042 981 aa11.97□□□□□ -0.49
USP39-214ENST00000474572 DDX54Q8TDD1 881 aaKnown RBP11.97□□□□□ -0.49
USP39-214ENST00000474572 GPATCH3Q96I76 525 aa11.97□□□□□ -0.49
USP39-214ENST00000474572 TEX13AQ9BXU3 409 aaPredicted RBP11.97□□□□□ -0.49
USP39-214ENST00000474572 BCL11AQ9H165 835 aa11.97□□□□□ -0.49
USP39-214ENST00000474572 TMOD3Q9NYL9 352 aa11.97□□□□□ -0.49
USP39-214ENST00000474572 RAD50Q92878 1312 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 ST18O60284 1047 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 MCCP23508 829 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 PTPN12Q05209 780 aaKnown RBP11.96□□□□□ -0.49
USP39-214ENST00000474572 G3BP1Q13283 466 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP39-214ENST00000474572 TTLL7Q6ZT98 887 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 ISCA1Q9BUE6 129 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 IL25Q9H293 177 aa11.96□□□□□ -0.49
USP39-214ENST00000474572 RFX7Q2KHR2 1363 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 ZNF831Q5JPB2 1677 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 A0A087WZG4 1122 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 A1BGP04217 495 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 MCM4P33991 863 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 HSPA4P34932 840 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 FOXO4P98177 505 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 CLEC17AQ6ZS10 378 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 SPRYD3Q8NCJ5 442 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 CCDC191Q8NCU4 936 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 EAF2Q96CJ1 260 aaPredicted RBP11.95□□□□□ -0.5
USP39-214ENST00000474572 SNRKQ9NRH2 765 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 ATG3Q9NT62 314 aa11.95□□□□□ -0.5
USP39-214ENST00000474572 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.95□□□□□ -0.5
USP39-214ENST00000474572 IFIT2P09913 472 aaKnown RBP11.94□□□□□ -0.5
USP39-214ENST00000474572 MCM2P49736 904 aa11.94□□□□□ -0.5
USP39-214ENST00000474572 TRIM28Q13263 835 aaKnown RBP11.94□□□□□ -0.5
USP39-214ENST00000474572 GSE1Q14687 1217 aa11.94□□□□□ -0.5
USP39-214ENST00000474572 UBE3BQ7Z3V4 1068 aa11.94□□□□□ -0.5
USP39-214ENST00000474572 AACSQ86V21 672 aa11.94□□□□□ -0.5
USP39-214ENST00000474572 PIGBQ92521 554 aa11.94□□□□□ -0.5
USP39-214ENST00000474572 EVI5LQ96CN4 794 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms